Difference between revisions of "TSS:Hg 121797.1"
From referenceTSS
| Line 2: | Line 2: | ||
|KOX-1= | |KOX-1= | ||
|RENOX= | |RENOX= | ||
| − | |all_trans=ENST00000525196.5:0 ENST00000529343.5:0 ENST00000525278.1:0 | + | |all_trans=ENST00000263317.9:0 ENST00000525196.5:0 ENST00000529343.5:0 ENST00000525278.1:0 NM_001291926:0 NM_016931:0 NM_001143836:0 NR_120406:0 BC034780:0 AF254621:9 ENST00000534731.5:13 ENST00000527626.5:13 AK291830:13 AK298376:13 BC040105:23 AK311389:48 LP764880:-90 LP764881:-90 AB041035:-90 JF432404:91 KJ893751:91 CU691812:92 ENST00000531342.5:95 ENST00000375979.7:95 AF261943:95 AJ704725:95 AJ704726:95 AJ704727:95 AJ704728:95 AJ704729:95 AY288918:95 ENST00000393282.2:-170 BC051371:-170 ENST00000343727.9:210 NM_001291927:363 AK298328:363 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=7 |
|end=89491395 | |end=89491395 | ||
|end_of_center_position=89491368 | |end_of_center_position=89491368 | ||
|entrez_id=50507 | |entrez_id=50507 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=KOX | + | |gene_alias=KOX{{!}}KOX-1{{!}}RENOX |
|gene_description=NADPH oxidase 4 | |gene_description=NADPH oxidase 4 | ||
|gene_id=50507 | |gene_id=50507 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:7891 | |hgnc_mgi_id=HGNC:7891 | ||
|nearest_ensembl=ENSG00000086991 | |nearest_ensembl=ENSG00000086991 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001291926 |
|nearest_refseq=NM_016931 | |nearest_refseq=NM_016931 | ||
|nearest_unigene=Hs.371036 | |nearest_unigene=Hs.371036 | ||
| − | |num_trans= | + | |num_trans=36 |
|species=human | |species=human | ||
|start=89491340 | |start=89491340 | ||
|start_of_center_position=89491367 | |start_of_center_position=89491367 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000525196.5 ENST00000529343.5 ENST00000525278.1 | + | |transcript_name=ENST00000263317.9 ENST00000525196.5 ENST00000529343.5 ENST00000525278.1 NM_001291926 NM_016931 NM_001143836 NR_120406 BC034780 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_121797.1 | |tss_id=hg_121797.1 | ||
Revision as of 00:33, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89491367 |
|---|---|
| End of the center position in the TSS region: | 89491368 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000263317.9 ENST00000525196.5 ENST00000529343.5 ENST00000525278.1 NM_001291926 NM_016931 NM_001143836 NR_120406 BC034780 |
|---|---|
| Distance: | 0 |
| Num_trans: | 36 |
| All_trans: | ENST00000263317.9:0 ENST00000525196.5:0 ENST00000529343.5:0 ENST00000525278.1:0 NM_001291926:0 NM_016931:0 NM_001143836:0 NR_120406:0 BC034780:0 AF254621:9 ENST00000534731.5:13 ENST00000527626.5:13 AK291830:13 AK298376:13 BC040105:23 AK311389:48 LP764880:-90 LP764881:-90 AB041035:-90 JF432404:91 KJ893751:91 CU691812:92 ENST00000531342.5:95 ENST00000375979.7:95 AF261943:95 AJ704725:95 AJ704726:95 AJ704727:95 AJ704728:95 AJ704729:95 AY288918:95 ENST00000393282.2:-170 BC051371:-170 ENST00000343727.9:210 NM_001291927:363 AK298328:363 |
TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NM_001291926 |
| Entrez ID: | 50507 |
| Nearest Unigene: | Hs.371036 |
| Nearest Refseq: | NM_016931 |
| Nearest Ensembl: | ENSG00000086991 |
| Gene Name: | NADPH oxidase 4 |
| Gene Alias: | KOX|KOX-1|RENOX |
| Gene Description: | NADPH oxidase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
