Difference between revisions of "TSS:Hg 121940.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|PR= | |PR= | ||
| − | |all_trans=ENST00000534013.5:-26 | + | |all_trans=ENST00000534013.5:-26 AK304853:-26 ENST00000325455.10:-112 ENST00000617858.4:-112 ENST00000619228.2:-112 NM_000926:-112 NM_001271162:-112 LF385523:-112 MA621100:-112 LF375569:-240 MA611146:-240 LF213148:-349 MA448725:-349 LF208370:-439 MA443947:-439 AF016381:448 M15716:448 LF212258:-451 MA447835:-451 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=-26 | |distance=-26 | ||
| − | |distance_to_tss= | + | |distance_to_tss=117 |
|end=101129701 | |end=101129701 | ||
|end_of_center_position=101129697 | |end_of_center_position=101129697 | ||
|entrez_id=5241 | |entrez_id=5241 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=NR3C3 | + | |gene_alias=NR3C3{{!}}PR |
|gene_description=progesterone receptor | |gene_description=progesterone receptor | ||
|gene_id=5241 | |gene_id=5241 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:8910 | |hgnc_mgi_id=HGNC:8910 | ||
|nearest_ensembl=ENSG00000082175 | |nearest_ensembl=ENSG00000082175 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_000926 |
|nearest_refseq=NM_000926 | |nearest_refseq=NM_000926 | ||
|nearest_unigene=Hs.32405 | |nearest_unigene=Hs.32405 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=101129691 | |start=101129691 | ||
|start_of_center_position=101129696 | |start_of_center_position=101129696 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000534013.5 | + | |transcript_name=ENST00000534013.5 AK304853 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_121940.1 | |tss_id=hg_121940.1 | ||
Revision as of 00:37, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 101129696 |
|---|---|
| End of the center position in the TSS region: | 101129697 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000534013.5 AK304853 |
|---|---|
| Distance: | -26 |
| Num_trans: | 19 |
| All_trans: | ENST00000534013.5:-26 AK304853:-26 ENST00000325455.10:-112 ENST00000617858.4:-112 ENST00000619228.2:-112 NM_000926:-112 NM_001271162:-112 LF385523:-112 MA621100:-112 LF375569:-240 MA611146:-240 LF213148:-349 MA448725:-349 LF208370:-439 MA443947:-439 AF016381:448 M15716:448 LF212258:-451 MA447835:-451 |
TATA-Box annotation
| Distance to TSS: | 117 |
|---|---|
| Nearest PromoterID: | NM_000926 |
| Entrez ID: | 5241 |
| Nearest Unigene: | Hs.32405 |
| Nearest Refseq: | NM_000926 |
| Nearest Ensembl: | ENSG00000082175 |
| Gene Name: | progesterone receptor |
| Gene Alias: | NR3C3|PR |
| Gene Description: | progesterone receptor |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
