Difference between revisions of "TSS:Hg 123264.1"
From referenceTSS
| Line 4: | Line 4: | ||
|THY28= | |THY28= | ||
|THY28KD= | |THY28KD= | ||
| − | |all_trans=JF432542:101 KJ893679:101 AK308498:-247 ENST00000392595.6 | + | |all_trans=LF375887:80 MA611464:80 JF432542:101 KJ893679:101 LF375886:-137 MA611463:-137 AK308498:-247 ENST00000392595.6:-250 AF087886:-250 ENST00000525677.1:-303 AF182413:-307 AF161493:-328 AF059619:-340 BC093074:-343 ENST00000533975.1:-350 AK311024:-350 ENST00000352327.5:-352 BC006978:-352 ENST00000341541.8:-354 NM_001037304:-354 NM_014174:-354 NM_001037305:-354 NM_199298:-354 NM_199297:-354 ENST00000531135.5:-355 LF384535:-368 MA620112:-368 ENST00000392594.7:-372 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| − | |distance= | + | |distance=80 |
| − | |distance_to_tss= | + | |distance_to_tss=361 |
|end=134252998 | |end=134252998 | ||
|end_of_center_position=134252991 | |end_of_center_position=134252991 | ||
|entrez_id=29087 | |entrez_id=29087 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=HSPC144 | + | |gene_alias=HSPC144{{!}}MDS012{{!}}MY105{{!}}THY28{{!}}THY28KD |
|gene_description=thymocyte nuclear protein 1 | |gene_description=thymocyte nuclear protein 1 | ||
|gene_id=29087 | |gene_id=29087 | ||
| − | |gene_name= | + | |gene_name=THYN1 |
|gene_source=HGNC:29560 | |gene_source=HGNC:29560 | ||
|gene_symbol=THYN1 | |gene_symbol=THYN1 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:29560 | |hgnc_mgi_id=HGNC:29560 | ||
|nearest_ensembl=ENSG00000151500 | |nearest_ensembl=ENSG00000151500 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001037304 |
|nearest_refseq=NM_014174 | |nearest_refseq=NM_014174 | ||
|nearest_unigene=Hs.13645 | |nearest_unigene=Hs.13645 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=134252983 | |start=134252983 | ||
|start_of_center_position=134252990 | |start_of_center_position=134252990 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF375887 MA611464 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_123264.1 | |tss_id=hg_123264.1 | ||
Latest revision as of 01:07, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 134252990 |
|---|---|
| End of the center position in the TSS region: | 134252991 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF375887 MA611464 |
|---|---|
| Distance: | 80 |
| Num_trans: | 28 |
| All_trans: | LF375887:80 MA611464:80 JF432542:101 KJ893679:101 LF375886:-137 MA611463:-137 AK308498:-247 ENST00000392595.6:-250 AF087886:-250 ENST00000525677.1:-303 AF182413:-307 AF161493:-328 AF059619:-340 BC093074:-343 ENST00000533975.1:-350 AK311024:-350 ENST00000352327.5:-352 BC006978:-352 ENST00000341541.8:-354 NM_001037304:-354 NM_014174:-354 NM_001037305:-354 NM_199298:-354 NM_199297:-354 ENST00000531135.5:-355 LF384535:-368 MA620112:-368 ENST00000392594.7:-372 |
TATA-Box annotation
| Distance to TSS: | 361 |
|---|---|
| Nearest PromoterID: | NM_001037304 |
| Entrez ID: | 29087 |
| Nearest Unigene: | Hs.13645 |
| Nearest Refseq: | NM_014174 |
| Nearest Ensembl: | ENSG00000151500 |
| Gene Name: | THYN1 |
| Gene Alias: | HSPC144|MDS012|MY105|THY28|THY28KD |
| Gene Description: | thymocyte nuclear protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
