Difference between revisions of "TSS:Hg 124202.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000622602. | + | |all_trans=ENST00000622602.2:0 NM_001271592:0 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=19 |
|end=11171270 | |end=11171270 | ||
|end_of_center_position=11171213 | |end_of_center_position=11171213 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001271592 | |nearest_refseq=NM_001271592 | ||
|nearest_unigene=Hs.521817 | |nearest_unigene=Hs.521817 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=11171155 | |start=11171155 | ||
|start_of_center_position=11171212 | |start_of_center_position=11171212 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-85(AGCTCTAAATGG,-,0.00) |
| − | |transcript_name=ENST00000622602. | + | |transcript_name=ENST00000622602.2 NM_001271592 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_124202.1 | |tss_id=hg_124202.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A0G2JPJ8 | + | |uniprot_id=A0A0G2JPJ8 P0DMW3 |
}} | }} | ||
Revision as of 01:29, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 11171212 |
|---|---|
| End of the center position in the TSS region: | 11171213 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000622602.2 NM_001271592 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENST00000622602.2:0 NM_001271592:0 |
TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NM_001271592 |
| Entrez ID: | 100129361 |
| Nearest Unigene: | Hs.521817 |
| Nearest Refseq: | NM_001271592 |
| Nearest Ensembl: | ENSG00000256537 |
| Gene Name: | small integral membrane protein 10 like 1 |
| Gene Alias: | - |
| Gene Description: | small integral membrane protein 10 like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -85(AGCTCTAAATGG,-,0.00) |
