Difference between revisions of "TSS:Hg 124986.1"
From referenceTSS
| Line 2: | Line 2: | ||
|FRABP= | |FRABP= | ||
|ZFYVE6= | |ZFYVE6= | ||
| − | |all_trans=ENST00000534526. | + | |all_trans=ENST00000534526.7:0 NM_001384126:0 NM_001370298:0 ENST00000550091.5:282 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-12 |
|end=32399574 | |end=32399574 | ||
|end_of_center_position=32399546 | |end_of_center_position=32399546 | ||
|entrez_id=121512 | |entrez_id=121512 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=CMT4H | + | |gene_alias=CMT4H{{!}}FRABP{{!}}ZFYVE6 |
| − | |gene_description= | + | |gene_description=FYVE, RhoGEF and PH domain containing 4 |
|gene_id=121512 | |gene_id=121512 | ||
| − | |gene_name= | + | |gene_name=FYVE, RhoGEF and PH domain containing 4 |
|gene_source=HGNC:19125 | |gene_source=HGNC:19125 | ||
|gene_symbol=FGD4 | |gene_symbol=FGD4 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:19125 | |hgnc_mgi_id=HGNC:19125 | ||
|nearest_ensembl=ENSG00000139132 | |nearest_ensembl=ENSG00000139132 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001370298 |
|nearest_refseq=NM_139241 | |nearest_refseq=NM_139241 | ||
|nearest_unigene=Hs.117835 | |nearest_unigene=Hs.117835 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=32399545 | |start_of_center_position=32399545 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000534526. | + | |transcript_name=ENST00000534526.7 NM_001384126 NM_001370298 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_124986.1 | |tss_id=hg_124986.1 | ||
Revision as of 01:47, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32399545 |
|---|---|
| End of the center position in the TSS region: | 32399546 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000534526.7 NM_001384126 NM_001370298 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | ENST00000534526.7:0 NM_001384126:0 NM_001370298:0 ENST00000550091.5:282 |
TATA-Box annotation
| Distance to TSS: | -12 |
|---|---|
| Nearest PromoterID: | NM_001370298 |
| Entrez ID: | 121512 |
| Nearest Unigene: | Hs.117835 |
| Nearest Refseq: | NM_139241 |
| Nearest Ensembl: | ENSG00000139132 |
| Gene Name: | FYVE, RhoGEF and PH domain containing 4 |
| Gene Alias: | CMT4H|FRABP|ZFYVE6 |
| Gene Description: | FYVE, RhoGEF and PH domain containing 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
