Difference between revisions of "TSS:Hg 126899.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000548779.1:0 | + | |all_trans=ENST00000548779.1:0 NR_149000:0 AK093193:0 ENST00000549953.1:272 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=13 |
|end=75234768 | |end=75234768 | ||
|end_of_center_position=75234753 | |end_of_center_position=75234753 | ||
| − | |entrez_id= | + | |entrez_id=100130268 |
|gc_percent=0.323383 | |gc_percent=0.323383 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=uncharacterized LOC100130268 |
|gene_id=100130268 | |gene_id=100130268 | ||
| − | |gene_name= | + | |gene_name=CAPS2 antisense RNA 1 |
| − | |gene_source= | + | |gene_source=HGNC:40769 |
| − | |gene_symbol= | + | |gene_symbol=CAPS2-AS1 |
|gene_synonyms= | |gene_synonyms= | ||
| − | |gene_type= | + | |gene_type=ncRNA |
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=HGNC:40769 |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000254451 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_149000 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_149000 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.524596 |
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=75234737 | |start=75234737 | ||
|start_of_center_position=75234752 | |start_of_center_position=75234752 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=2(GCTTTTAAATCA,+,0.00) |
| − | |transcript_name=ENST00000548779.1 | + | |transcript_name=ENST00000548779.1 NR_149000 AK093193 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_126899.1 | |tss_id=hg_126899.1 | ||
Revision as of 02:32, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 75234752 |
|---|---|
| End of the center position in the TSS region: | 75234753 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000548779.1 NR_149000 AK093193 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | ENST00000548779.1:0 NR_149000:0 AK093193:0 ENST00000549953.1:272 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NR_149000 |
| Entrez ID: | 100130268 |
| Nearest Unigene: | Hs.524596 |
| Nearest Refseq: | NR_149000 |
| Nearest Ensembl: | ENSG00000254451 |
| Gene Name: | CAPS2 antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100130268 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.323383 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 2(GCTTTTAAATCA,+,0.00) |
