Difference between revisions of "TSS:Hg 129454.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000667501.1:0 ENST00000670937.1:0 ENST00000655933.1:-1 ENST00000663603.1:-24 ENST00000412084.1:-72 NR_104634:-72 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=84 | |distance_to_tss=84 | ||
|end=9943423 | |end=9943423 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2470 |
|gene_id=100506159 | |gene_id=100506159 | ||
| − | |gene_name= | + | |gene_name=long intergenic non-protein coding RNA 2470 |
| − | |gene_source= | + | |gene_source=HGNC:53409 |
| − | |gene_symbol= | + | |gene_symbol=LINC02470 |
| − | |gene_synonyms= | + | |gene_synonyms=AC091814.2 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=HGNC:53409 |
|nearest_ensembl=ENSG00000225231 | |nearest_ensembl=ENSG00000225231 | ||
|nearest_promoter_id=NR_104634 | |nearest_promoter_id=NR_104634 | ||
|nearest_refseq=NR_104634 | |nearest_refseq=NR_104634 | ||
|nearest_unigene=Hs.282397 | |nearest_unigene=Hs.282397 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=9943398 | |start=9943398 | ||
|start_of_center_position=9943410 | |start_of_center_position=9943410 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000667501.1 ENST00000670937.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_129454.1 | |tss_id=hg_129454.1 | ||
Revision as of 03:32, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 9943410 |
|---|---|
| End of the center position in the TSS region: | 9943411 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000667501.1 ENST00000670937.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENST00000667501.1:0 ENST00000670937.1:0 ENST00000655933.1:-1 ENST00000663603.1:-24 ENST00000412084.1:-72 NR_104634:-72 |
TATA-Box annotation
| Distance to TSS: | 84 |
|---|---|
| Nearest PromoterID: | NR_104634 |
| Entrez ID: | 100506159 |
| Nearest Unigene: | Hs.282397 |
| Nearest Refseq: | NR_104634 |
| Nearest Ensembl: | ENSG00000225231 |
| Gene Name: | long intergenic non-protein coding RNA 2470 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2470 |
| Gene Type: | ncRNA |
| CpG%: | 0.055 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
