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Difference between revisions of "TSS:Hg 129646.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
|all_trans=ENST00000535904.5:-44 uc058lgv.1:-44 K03207:-44 ENST00000279575.5:-47 ENST00000621732.4:-47 ENST00000445719.2:-47 NM_002723:-47 NM_001261399:-47 uc001qzt.5:-47 uc031qgh.2:-47 uc058lgw.1:-47 BC128191:-47
+
|all_trans=K03207:-44 ENST00000621732.4:-47 ENST00000445719.2:-47 NM_001261399:-47 BC128191:-47 ENST00000279575.7:-48 NM_002723:-48
 
|chr=chr12
 
|chr=chr12
 
|cpg_percent=0.015
 
|cpg_percent=0.015
Line 12: Line 12:
 
|gene_description=proline rich protein BstNI subfamily 4
 
|gene_description=proline rich protein BstNI subfamily 4
 
|gene_id=5545
 
|gene_id=5545
|gene_name=proline-rich protein BstNI subfamily 4
+
|gene_name=proline rich protein BstNI subfamily 4
 
|gene_source=HGNC:9340
 
|gene_source=HGNC:9340
 
|gene_symbol=PRB4
 
|gene_symbol=PRB4
Line 22: Line 22:
 
|nearest_refseq=NM_002723
 
|nearest_refseq=NM_002723
 
|nearest_unigene=Hs.528651
 
|nearest_unigene=Hs.528651
|num_trans=12
+
|num_trans=7
 
|species=human
 
|species=human
 
|start=11310381
 
|start=11310381
 
|start_of_center_position=11310384
 
|start_of_center_position=11310384
 
|strand=-
 
|strand=-
|tata_box="-83(CTCTTTATAAAG,-,0.00),-81(CTTTATAAAGGG,+,0.00),-81(CTTTATAAAGGG,-,0.00)"
+
|tata_box=-83(CTCTTTATAAAG,-,0.00),-81(CTTTATAAAGGG,+,0.00),-81(CTTTATAAAGGG,-,0.00)
|transcript_name=ENST00000535904.5 uc058lgv.1 K03207
+
|transcript_name=K03207
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_129646.1
 
|tss_id=hg_129646.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=E9PAL0
+
|uniprot_id=
 
}}
 
}}

Revision as of 03:36, 16 June 2021

Basic information about the TSS


TSS ID:hg_129646.1
Species:human
Chr:chr12
TSS Classification:yes
Start:11310381
End:11310388
Strand:-
TSS Score:1
Start of the center position in the TSS region:11310384
End of the center position in the TSS region:11310385



Gene and protein annotation


Transcript_name:K03207
Distance:-44
GeneID:5545
HGNC/MGI_ID:HGNC:9340
UniProt_ID:
Gene_name:proline rich protein BstNI subfamily 4
Gene_symbol:PRB4
Gene_synonyms:
Gene_source:HGNC:9340



Transcript annotation


Transcript_name:K03207
Distance:-44
Num_trans:7
All_trans:K03207:-44 ENST00000621732.4:-47 ENST00000445719.2:-47 NM_001261399:-47 BC128191:-47 ENST00000279575.7:-48 NM_002723:-48



TATA-Box annotation


Distance to TSS:50
Nearest PromoterID:NM_001261399
Entrez ID:5545
Nearest Unigene:Hs.528651
Nearest Refseq:NM_002723
Nearest Ensembl:ENSG00000230657
Gene Name:proline rich protein BstNI subfamily 4
Gene Alias:Po
Gene Description:proline rich protein BstNI subfamily 4
Gene Type:protein-coding
CpG%:0.015
GC%:0.537313
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-83(CTCTTTATAAAG,-,0.00),-81(CTTTATAAAGGG,+,0.00),-81(CTTTATAAAGGG,-,0.00)