Difference between revisions of "TSS:Hg 129647.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=K03207:-26 ENST00000621732.4:-29 ENST00000445719.2:-29 NM_001261399:-29 BC128191:-29 ENST00000279575.7:-30 NM_002723:-30 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 12: | Line 12: | ||
|gene_description=proline rich protein BstNI subfamily 4 | |gene_description=proline rich protein BstNI subfamily 4 | ||
|gene_id=5545 | |gene_id=5545 | ||
| − | |gene_name=proline | + | |gene_name=proline rich protein BstNI subfamily 4 |
|gene_source=HGNC:9340 | |gene_source=HGNC:9340 | ||
|gene_symbol=PRB4 | |gene_symbol=PRB4 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_002723 | |nearest_refseq=NM_002723 | ||
|nearest_unigene=Hs.528651 | |nearest_unigene=Hs.528651 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=11310390 | |start=11310390 | ||
|start_of_center_position=11310398 | |start_of_center_position=11310398 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-70(CTCTTTATAAAG,-,0.00),-68(CTTTATAAAGGG,+,0.00),-68(CTTTATAAAGGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=K03207 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_129647.1 | |tss_id=hg_129647.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 03:36, 16 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 11310398 |
|---|---|
| End of the center position in the TSS region: | 11310399 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | K03207 |
|---|---|
| Distance: | -26 |
| Num_trans: | 7 |
| All_trans: | K03207:-26 ENST00000621732.4:-29 ENST00000445719.2:-29 NM_001261399:-29 BC128191:-29 ENST00000279575.7:-30 NM_002723:-30 |
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NM_001261399 |
| Entrez ID: | 5545 |
| Nearest Unigene: | Hs.528651 |
| Nearest Refseq: | NM_002723 |
| Nearest Ensembl: | ENSG00000230657 |
| Gene Name: | proline rich protein BstNI subfamily 4 |
| Gene Alias: | Po |
| Gene Description: | proline rich protein BstNI subfamily 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -70(CTCTTTATAAAG,-,0.00),-68(CTTTATAAAGGG,+,0.00),-68(CTTTATAAAGGG,-,0.00) |
