Difference between revisions of "TSS:Hg 130418.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC094762:0 BC126199:0 BC143966:0 BC143967:0 ENST00000070846.10 | + | |all_trans=ENST00000340811.9:0 NM_001005242:0 NM_004572:0 BC094762:0 BC126199:0 BC143966:0 BC143967:0 ENST00000070846.10:2 X97675:2 BC070083:-18 HQ258660:21 KJ891818:21 KR711660:21 KR711661:21 KR711662:21 KR711663:21 KR712218:21 AB590796:25 EU520483:27 EU520484:27 EU520485:27 EU520486:27 ENST00000546741.2:157 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_004572 | |nearest_refseq=NM_004572 | ||
|nearest_unigene=Hs.164384 | |nearest_unigene=Hs.164384 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=32896757 | |start=32896757 | ||
|start_of_center_position=32896789 | |start_of_center_position=32896789 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=BC094762 BC126199 BC143966 BC143967 | + | |transcript_name=ENST00000340811.9 NM_001005242 NM_004572 BC094762 BC126199 BC143966 BC143967 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_130418.1 | |tss_id=hg_130418.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q99959 |
}} | }} | ||
Revision as of 03:54, 16 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 32896789 |
|---|---|
| End of the center position in the TSS region: | 32896790 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000340811.9 NM_001005242 NM_004572 BC094762 BC126199 BC143966 BC143967 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000340811.9:0 NM_001005242:0 NM_004572:0 BC094762:0 BC126199:0 BC143966:0 BC143967:0 ENST00000070846.10:2 X97675:2 BC070083:-18 HQ258660:21 KJ891818:21 KR711660:21 KR711661:21 KR711662:21 KR711663:21 KR712218:21 AB590796:25 EU520483:27 EU520484:27 EU520485:27 EU520486:27 ENST00000546741.2:157 |
TATA-Box annotation
| Distance to TSS: | 56 |
|---|---|
| Nearest PromoterID: | NM_004572 |
| Entrez ID: | 5318 |
| Nearest Unigene: | Hs.164384 |
| Nearest Refseq: | NM_004572 |
| Nearest Ensembl: | ENSG00000057294 |
| Gene Name: | plakophilin 2 |
| Gene Alias: | ARVD9 |
| Gene Description: | plakophilin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.81592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
