Difference between revisions of "TSS:Hg 134535.1"
From referenceTSS
| Line 7: | Line 7: | ||
|RPO1-3= | |RPO1-3= | ||
|TCS2= | |TCS2= | ||
| − | |all_trans= | + | |all_trans=ENST00000637389.1:-233 ENST00000399697.7:338 BC018528:425 ENST00000489647.4:429 BC015319:429 ENST00000630983.1:434 ENST00000636817.1:434 BC000889:434 BC006972:434 BC054519:445 ENST00000302979.5:451 ENST00000465887.2:451 NM_015972:451 NM_152705:451 AF077044:451 AK311833:451 AK097973:451 ENST00000637071.1:452 AK000623:452 AK307356:-477 ENST00000621089.2:-479 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance=- | + | |distance=-233 |
| − | |distance_to_tss=- | + | |distance_to_tss=-459 |
|end=27621441 | |end=27621441 | ||
|end_of_center_position=27621434 | |end_of_center_position=27621434 | ||
|entrez_id=51082 | |entrez_id=51082 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=AC19 | + | |gene_alias=AC19{{!}}POLR1C{{!}}RPA16{{!}}RPA9{{!}}RPAC2{{!}}RPC16{{!}}RPO1-3{{!}}TCS2 |
| − | |gene_description=RNA polymerase I subunit D | + | |gene_description=RNA polymerase I and III subunit D |
|gene_id=51082 | |gene_id=51082 | ||
| − | |gene_name=polymerase | + | |gene_name=RNA polymerase I and III subunit D |
|gene_source=HGNC:20422 | |gene_source=HGNC:20422 | ||
|gene_symbol=POLR1D | |gene_symbol=POLR1D | ||
| − | |gene_synonyms=MGC9850 RPA16 RPA9 RPAC2 RPO1-3 | + | |gene_synonyms=AC19 MGC9850 RPA16 RPA9 RPAC2 RPO1-3 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:20422 | |hgnc_mgi_id=HGNC:20422 | ||
|nearest_ensembl=ENSG00000186184 | |nearest_ensembl=ENSG00000186184 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_015972 |
|nearest_refseq=NM_015972 | |nearest_refseq=NM_015972 | ||
|nearest_unigene=Hs.507584 | |nearest_unigene=Hs.507584 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=27621425 | |start=27621425 | ||
|start_of_center_position=27621433 | |start_of_center_position=27621433 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000637389.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_134535.1 | |tss_id=hg_134535.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 05:30, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27621433 |
|---|---|
| End of the center position in the TSS region: | 27621434 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000637389.1 |
|---|---|
| Distance: | -233 |
| Num_trans: | 21 |
| All_trans: | ENST00000637389.1:-233 ENST00000399697.7:338 BC018528:425 ENST00000489647.4:429 BC015319:429 ENST00000630983.1:434 ENST00000636817.1:434 BC000889:434 BC006972:434 BC054519:445 ENST00000302979.5:451 ENST00000465887.2:451 NM_015972:451 NM_152705:451 AF077044:451 AK311833:451 AK097973:451 ENST00000637071.1:452 AK000623:452 AK307356:-477 ENST00000621089.2:-479 |
TATA-Box annotation
| Distance to TSS: | -459 |
|---|---|
| Nearest PromoterID: | NM_015972 |
| Entrez ID: | 51082 |
| Nearest Unigene: | Hs.507584 |
| Nearest Refseq: | NM_015972 |
| Nearest Ensembl: | ENSG00000186184 |
| Gene Name: | RNA polymerase I and III subunit D |
| Gene Alias: | AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 |
| Gene Description: | RNA polymerase I and III subunit D |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
