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Difference between revisions of "TSS:Hg 134538.1"

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Line 7: Line 7:
 
|RPO1-3=
 
|RPO1-3=
 
|TCS2=
 
|TCS2=
|all_trans=ENST00000489647.4:0 ENST00000630983.1:0 ENST00000465887.2:0 uc058wbo.1:0 uc058wbp.1:0 uc058wbq.1:0 BC018528:0 BC015319:0 BC000889:0 BC006972:0 BC054519:0 AF077044:0 AK311833:0 AK097973:0 AK000623:0 ENST00000399696.3:41 uc058wbr.1:41 AB464657:71 CU677257:71 AB527907:71 HQ448674:71 KJ893804:71 KJ898819:71 ENST00000399697.7:-73 NM_015972:-73 NM_152705:-73 uc001urp.4:-73 ENST00000302979.4:-430 uc001uro.4:-430
+
|all_trans=ENST00000489647.4:0 ENST00000630983.1:0 ENST00000636817.1:0 ENST00000302979.5:0 ENST00000465887.2:0 ENST00000637071.1:0 NM_015972:0 NM_152705:0 BC018528:0 BC015319:0 BC000889:0 BC006972:0 BC054519:0 AF077044:0 AK311833:0 AK097973:0 AK000623:0 ENST00000636226.1:34 ENST00000399696.3:41 AB464657:71 KJ893804:71 CU677257:71 AB527907:71 HQ448674:71 KJ898819:71 ENST00000399697.7:-73 ENST00000636618.1:246
 
|chr=chr13
 
|chr=chr13
 
|cpg_percent=0.11
 
|cpg_percent=0.11
 
|distance=0
 
|distance=0
|distance_to_tss=103
+
|distance_to_tss=-10
 
|end=27621913
 
|end=27621913
 
|end_of_center_position=27621883
 
|end_of_center_position=27621883
 
|entrez_id=51082
 
|entrez_id=51082
 
|gc_percent=0.746269
 
|gc_percent=0.746269
|gene_alias=AC19
+
|gene_alias=AC19{{!}}POLR1C{{!}}RPA16{{!}}RPA9{{!}}RPAC2{{!}}RPC16{{!}}RPO1-3{{!}}TCS2
|gene_description=RNA polymerase I subunit D
+
|gene_description=RNA polymerase I and III subunit D
 
|gene_id=51082
 
|gene_id=51082
|gene_name=polymerase (RNA) I subunit D
+
|gene_name=RNA polymerase I and III subunit D
 
|gene_source=HGNC:20422
 
|gene_source=HGNC:20422
 
|gene_symbol=POLR1D
 
|gene_symbol=POLR1D
|gene_synonyms=MGC9850 RPA16 RPA9 RPAC2 RPO1-3
+
|gene_synonyms=AC19 MGC9850 RPA16 RPA9 RPAC2 RPO1-3
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 
|hgnc_mgi_id=HGNC:20422
 
|hgnc_mgi_id=HGNC:20422
Line 29: Line 29:
 
|nearest_refseq=NM_015972
 
|nearest_refseq=NM_015972
 
|nearest_unigene=Hs.507584
 
|nearest_unigene=Hs.507584
|num_trans=29
+
|num_trans=27
 
|species=human
 
|species=human
 
|start=27621851
 
|start=27621851
 
|start_of_center_position=27621882
 
|start_of_center_position=27621882
 
|strand=+
 
|strand=+
|transcript_name=ENST00000489647.4 ENST00000630983.1 ENST00000465887.2 uc058wbo.1 uc058wbp.1 uc058wbq.1 BC018528 BC015319 BC000889 BC006972 BC054519 AF077044 AK311833 AK097973 AK000623
+
|transcript_name=ENST00000489647.4 ENST00000630983.1 ENST00000636817.1 ENST00000302979.5 ENST00000465887.2 ENST00000637071.1 NM_015972 NM_152705 BC018528 BC015319 BC000889 BC006972 BC054519 AF077044 AK311833 AK097973 AK000623
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_134538.1
 
|tss_id=hg_134538.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=A0A087X0U2 Q7Z776
+
|uniprot_id=A0A087WTY1 A0A087X0U2 A0A1B0GUZ5 P0DPB5 P0DPB6 Q7Z776
 
}}
 
}}

Revision as of 05:30, 16 June 2021

Basic information about the TSS


TSS ID:hg_134538.1
Species:human
Chr:chr13
TSS Classification:yes
Start:27621851
End:27621913
Strand:+
TSS Score:1
Start of the center position in the TSS region:27621882
End of the center position in the TSS region:27621883



Gene and protein annotation


Transcript_name:ENST00000489647.4 ENST00000630983.1 ENST00000636817.1 ENST00000302979.5 ENST00000465887.2 ENST00000637071.1 NM_015972 NM_152705 BC018528 BC015319 BC000889 BC006972 BC054519 AF077044 AK311833 AK097973 AK000623
Distance:0
GeneID:51082
HGNC/MGI_ID:HGNC:20422
UniProt_ID:A0A087WTY1 A0A087X0U2 A0A1B0GUZ5 P0DPB5 P0DPB6 Q7Z776
Gene_name:RNA polymerase I and III subunit D
Gene_symbol:POLR1D
Gene_synonyms:AC19 MGC9850 RPA16 RPA9 RPAC2 RPO1-3
Gene_source:HGNC:20422



Transcript annotation


Transcript_name:ENST00000489647.4 ENST00000630983.1 ENST00000636817.1 ENST00000302979.5 ENST00000465887.2 ENST00000637071.1 NM_015972 NM_152705 BC018528 BC015319 BC000889 BC006972 BC054519 AF077044 AK311833 AK097973 AK000623
Distance:0
Num_trans:27
All_trans:ENST00000489647.4:0 ENST00000630983.1:0 ENST00000636817.1:0 ENST00000302979.5:0 ENST00000465887.2:0 ENST00000637071.1:0 NM_015972:0 NM_152705:0 BC018528:0 BC015319:0 BC000889:0 BC006972:0 BC054519:0 AF077044:0 AK311833:0 AK097973:0 AK000623:0 ENST00000636226.1:34 ENST00000399696.3:41 AB464657:71 KJ893804:71 CU677257:71 AB527907:71 HQ448674:71 KJ898819:71 ENST00000399697.7:-73 ENST00000636618.1:246



TATA-Box annotation


Distance to TSS:-10
Nearest PromoterID:NM_015972
Entrez ID:51082
Nearest Unigene:Hs.507584
Nearest Refseq:NM_015972
Nearest Ensembl:ENSG00000186184
Gene Name:RNA polymerase I and III subunit D
Gene Alias:AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2
Gene Description:RNA polymerase I and III subunit D
Gene Type:protein-coding
CpG%:0.11
GC%:0.746269
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):