Difference between revisions of "TSS:Hg 134547.1"
From referenceTSS
| Line 7: | Line 7: | ||
|PDX-1= | |PDX-1= | ||
|STF-1= | |STF-1= | ||
| − | |all_trans=BC111592:-102 AB464648:-103 U35632:-114 U30329:-120 X99894:-199 | + | |all_trans=BC111592:-102 AB464648:-103 U35632:-114 U30329:-120 X99894:-199 ENST00000381033.5:-239 NM_000209:-239 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
|distance=-102 | |distance=-102 | ||
| − | |distance_to_tss= | + | |distance_to_tss=259 |
|end=27920279 | |end=27920279 | ||
|end_of_center_position=27920259 | |end_of_center_position=27920259 | ||
|entrez_id=3651 | |entrez_id=3651 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=GSF | + | |gene_alias=GSF{{!}}IDX-1{{!}}IPF1{{!}}IUF1{{!}}MODY4{{!}}PAGEN1{{!}}PDX-1{{!}}STF-1 |
|gene_description=pancreatic and duodenal homeobox 1 | |gene_description=pancreatic and duodenal homeobox 1 | ||
|gene_id=3651 | |gene_id=3651 | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_000209 | |nearest_refseq=NM_000209 | ||
|nearest_unigene=Hs.32938 | |nearest_unigene=Hs.32938 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=27920238 | |start=27920238 | ||
Revision as of 05:31, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27920258 |
|---|---|
| End of the center position in the TSS region: | 27920259 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC111592 |
|---|---|
| Distance: | -102 |
| Num_trans: | 7 |
| All_trans: | BC111592:-102 AB464648:-103 U35632:-114 U30329:-120 X99894:-199 ENST00000381033.5:-239 NM_000209:-239 |
TATA-Box annotation
| Distance to TSS: | 259 |
|---|---|
| Nearest PromoterID: | NM_000209 |
| Entrez ID: | 3651 |
| Nearest Unigene: | Hs.32938 |
| Nearest Refseq: | NM_000209 |
| Nearest Ensembl: | ENSG00000139515 |
| Gene Name: | pancreatic and duodenal homeobox 1 |
| Gene Alias: | GSF|IDX-1|IPF1|IUF1|MODY4|PAGEN1|PDX-1|STF-1 |
| Gene Description: | pancreatic and duodenal homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
