Difference between revisions of "TSS:Hg 135518.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000418532. | + | |all_trans=ENST00000418532.6:-19 NM_001242868:-19 LF210195:-50 MA445772:-50 ENST00000422114.5:161 ENST00000466548.5:161 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| − | |distance= | + | |distance=-19 |
| − | |distance_to_tss= | + | |distance_to_tss=29 |
|end=77697727 | |end=77697727 | ||
|end_of_center_position=77697717 | |end_of_center_position=77697717 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_144595 | |nearest_refseq=NM_144595 | ||
|nearest_unigene=Hs.349955 | |nearest_unigene=Hs.349955 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=77697705 | |start=77697705 | ||
|start_of_center_position=77697716 | |start_of_center_position=77697716 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000418532. | + | |transcript_name=ENST00000418532.6 NM_001242868 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_135518.1 | |tss_id=hg_135518.1 | ||
Revision as of 05:53, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 77697716 |
|---|---|
| End of the center position in the TSS region: | 77697717 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000418532.6 NM_001242868 |
|---|---|
| Distance: | -19 |
| Num_trans: | 6 |
| All_trans: | ENST00000418532.6:-19 NM_001242868:-19 LF210195:-50 MA445772:-50 ENST00000422114.5:161 ENST00000466548.5:161 |
TATA-Box annotation
| Distance to TSS: | 29 |
|---|---|
| Nearest PromoterID: | NM_001242868 |
| Entrez ID: | 122060 |
| Nearest Unigene: | Hs.349955 |
| Nearest Refseq: | NM_144595 |
| Nearest Ensembl: | ENSG00000139737 |
| Gene Name: | SLAIN motif family member 1 |
| Gene Alias: | C13orf32 |
| Gene Description: | SLAIN motif family member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
