Difference between revisions of "TSS:Hg 135525.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AL834203:5 AK289600:46 BC045177:63 ENST00000462234.5 | + | |all_trans=AL834203:5 AK289600:46 BC045177:63 ENST00000462234.5:65 ENST00000441784.5:-69 NM_001242870:-69 NM_144595:-69 NM_001366666:-69 AK289714:79 ENST00000465831.1:-88 AK295423:93 ENST00000314070.9:-128 ENST00000351546.7:-128 NM_001242871:-128 NM_001242869:-128 ENST00000496045.5:247 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=5 | |distance=5 | ||
| − | |distance_to_tss= | + | |distance_to_tss=70 |
|end=77741291 | |end=77741291 | ||
|end_of_center_position=77741290 | |end_of_center_position=77741290 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:26387 | |hgnc_mgi_id=HGNC:26387 | ||
|nearest_ensembl=ENSG00000139737 | |nearest_ensembl=ENSG00000139737 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001242870 |
|nearest_refseq=NM_144595 | |nearest_refseq=NM_144595 | ||
|nearest_unigene=Hs.349955 | |nearest_unigene=Hs.349955 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=77741287 | |start=77741287 | ||
Revision as of 05:53, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 77741289 |
|---|---|
| End of the center position in the TSS region: | 77741290 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AL834203 |
|---|---|
| Distance: | 5 |
| Num_trans: | 16 |
| All_trans: | AL834203:5 AK289600:46 BC045177:63 ENST00000462234.5:65 ENST00000441784.5:-69 NM_001242870:-69 NM_144595:-69 NM_001366666:-69 AK289714:79 ENST00000465831.1:-88 AK295423:93 ENST00000314070.9:-128 ENST00000351546.7:-128 NM_001242871:-128 NM_001242869:-128 ENST00000496045.5:247 |
TATA-Box annotation
| Distance to TSS: | 70 |
|---|---|
| Nearest PromoterID: | NM_001242870 |
| Entrez ID: | 122060 |
| Nearest Unigene: | Hs.349955 |
| Nearest Refseq: | NM_144595 |
| Nearest Ensembl: | ENSG00000139737 |
| Gene Name: | SLAIN motif family member 1 |
| Gene Alias: | C13orf32 |
| Gene Description: | SLAIN motif family member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
