Difference between revisions of "TSS:Hg 135527.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000462234.5 | + | |all_trans=ENST00000462234.5:0 AK289600:0 BC045177:0 AK289714:0 AK295423:0 AL834203:-36 ENST00000441784.5:-113 NM_001242870:-113 NM_144595:-113 NM_001366666:-113 ENST00000465831.1:-132 ENST00000496045.5:154 ENST00000314070.9:-172 ENST00000351546.7:-172 NM_001242871:-172 NM_001242869:-172 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=139 |
|end=77741384 | |end=77741384 | ||
|end_of_center_position=77741358 | |end_of_center_position=77741358 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:26387 | |hgnc_mgi_id=HGNC:26387 | ||
|nearest_ensembl=ENSG00000139737 | |nearest_ensembl=ENSG00000139737 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001242870 |
|nearest_refseq=NM_144595 | |nearest_refseq=NM_144595 | ||
|nearest_unigene=Hs.349955 | |nearest_unigene=Hs.349955 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=77741331 | |start=77741331 | ||
|start_of_center_position=77741357 | |start_of_center_position=77741357 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000462234.5 | + | |transcript_name=ENST00000462234.5 AK289600 BC045177 AK289714 AK295423 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_135527.1 | |tss_id=hg_135527.1 | ||
Revision as of 05:53, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 77741357 |
|---|---|
| End of the center position in the TSS region: | 77741358 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000462234.5 AK289600 BC045177 AK289714 AK295423 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000462234.5:0 AK289600:0 BC045177:0 AK289714:0 AK295423:0 AL834203:-36 ENST00000441784.5:-113 NM_001242870:-113 NM_144595:-113 NM_001366666:-113 ENST00000465831.1:-132 ENST00000496045.5:154 ENST00000314070.9:-172 ENST00000351546.7:-172 NM_001242871:-172 NM_001242869:-172 |
TATA-Box annotation
| Distance to TSS: | 139 |
|---|---|
| Nearest PromoterID: | NM_001242870 |
| Entrez ID: | 122060 |
| Nearest Unigene: | Hs.349955 |
| Nearest Refseq: | NM_144595 |
| Nearest Ensembl: | ENSG00000139737 |
| Gene Name: | SLAIN motif family member 1 |
| Gene Alias: | C13orf32 |
| Gene Description: | SLAIN motif family member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.39801 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
