Difference between revisions of "TSS:Hg 136496.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000381116.5:-22 | + | |all_trans=ENST00000381116.5:-22 ENST00000381120.8:-22 AF265440:-22 BC046166:-32 ENST00000484342.2:-45 ENST00000485650.5:-49 NM_152912:-60 NM_001166263:-60 DQ575760:238 ENST00000464753.1:334 NM_001166261:336 LF384075:336 MA619652:336 ENST00000460973.5:337 NM_001166262:344 BC039599:345 ENST00000493719.5:369 ENST00000485959.5:390 ENST00000461838.5:402 ENST00000471771.5:492 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_152912 | |nearest_refseq=NM_152912 | ||
|nearest_unigene=Hs.534582 | |nearest_unigene=Hs.534582 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=27450532 | |start=27450532 | ||
|start_of_center_position=27450537 | |start_of_center_position=27450537 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-86(TTCCTTTAAAGG,-,0.00),-85(TCCTTTAAAGGA,+,0.00),-85(TCCTTTAAAGGA,-,0.00),-84(CCTTTAAAGGAC,+,0.00) |
| − | |transcript_name=ENST00000381116.5 | + | |transcript_name=ENST00000381116.5 ENST00000381120.8 AF265440 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_136496.1 | |tss_id=hg_136496.1 | ||
Revision as of 06:15, 16 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 27450537 |
|---|---|
| End of the center position in the TSS region: | 27450538 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000381116.5 ENST00000381120.8 AF265440 |
|---|---|
| Distance: | -22 |
| Num_trans: | 20 |
| All_trans: | ENST00000381116.5:-22 ENST00000381120.8:-22 AF265440:-22 BC046166:-32 ENST00000484342.2:-45 ENST00000485650.5:-49 NM_152912:-60 NM_001166263:-60 DQ575760:238 ENST00000464753.1:334 NM_001166261:336 LF384075:336 MA619652:336 ENST00000460973.5:337 NM_001166262:344 BC039599:345 ENST00000493719.5:369 ENST00000485959.5:390 ENST00000461838.5:402 ENST00000471771.5:492 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NM_001166263 |
| Entrez ID: | 219402 |
| Nearest Unigene: | Hs.534582 |
| Nearest Refseq: | NM_152912 |
| Nearest Ensembl: | ENSG00000122033 |
| Gene Name: | mitochondrial translational initiation factor 3 |
| Gene Alias: | IF3mt |
| Gene Description: | mitochondrial translational initiation factor 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -86(TTCCTTTAAAGG,-,0.00),-85(TCCTTTAAAGGA,+,0.00),-85(TCCTTTAAAGGA,-,0.00),-84(CCTTTAAAGGAC,+,0.00) |
