Difference between revisions of "TSS:Hg 137943.1"
From referenceTSS
| Line 4: | Line 4: | ||
|STE20= | |STE20= | ||
|STK3= | |STK3= | ||
| − | |all_trans=ENST00000397517.6:133 | + | |all_trans=ENST00000397517.6:133 NM_001286649:133 EU668350:142 LF385021:142 MA620598:142 ENST00000539966.6:177 NM_001032296:177 BC035578:189 BC065378:189 AK299140:416 AK297583:418 AF024636:420 KJ897844:494 KJ905348:494 DQ890912:494 AB590338:494 CU690112:497 BT019619:498 CR542227:498 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=133 | |distance=133 | ||
| − | |distance_to_tss= | + | |distance_to_tss=49 |
|end=98577324 | |end=98577324 | ||
|end_of_center_position=98577304 | |end_of_center_position=98577304 | ||
| − | |entrez_id= | + | |entrez_id=100874069 |
|gc_percent=0.855721 | |gc_percent=0.855721 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=STK24 antisense RNA 1 |
|gene_id=8428 | |gene_id=8428 | ||
|gene_name=serine/threonine kinase 24 | |gene_name=serine/threonine kinase 24 | ||
| Line 20: | Line 20: | ||
|gene_symbol=STK24 | |gene_symbol=STK24 | ||
|gene_synonyms=MST-3 MST3 MST3B STE20 STK3 | |gene_synonyms=MST-3 MST3 MST3B STE20 STK3 | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=HGNC:11403 | |hgnc_mgi_id=HGNC:11403 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_046542 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_046542 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.594160 |
|num_trans=19 | |num_trans=19 | ||
|species=human | |species=human | ||
| Line 31: | Line 31: | ||
|start_of_center_position=98577303 | |start_of_center_position=98577303 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000397517.6 | + | |transcript_name=ENST00000397517.6 NM_001286649 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_137943.1 | |tss_id=hg_137943.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DR80 | + | |uniprot_id=B4DR80 |
}} | }} | ||
Revision as of 06:49, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 98577303 |
|---|---|
| End of the center position in the TSS region: | 98577304 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000397517.6 NM_001286649 |
|---|---|
| Distance: | 133 |
| Num_trans: | 19 |
| All_trans: | ENST00000397517.6:133 NM_001286649:133 EU668350:142 LF385021:142 MA620598:142 ENST00000539966.6:177 NM_001032296:177 BC035578:189 BC065378:189 AK299140:416 AK297583:418 AF024636:420 KJ897844:494 KJ905348:494 DQ890912:494 AB590338:494 CU690112:497 BT019619:498 CR542227:498 |
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NR_046542 |
| Entrez ID: | 100874069 |
| Nearest Unigene: | Hs.594160 |
| Nearest Refseq: | NR_046542 |
| Nearest Ensembl: | |
| Gene Name: | serine/threonine kinase 24 |
| Gene Alias: | - |
| Gene Description: | STK24 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.155 |
| GC%: | 0.855721 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
