Difference between revisions of "TSS:Hg 138421.1"
From referenceTSS
Line 4: | Line 4: | ||
|ARTD2= | |ARTD2= | ||
|PARP-2= | |PARP-2= | ||
− | |all_trans= | + | |all_trans=LF384983:66 MA620560:66 ENST00000250416.9:67 ENST00000529465.6:80 ENST00000429687.8:87 NM_005484:87 NM_001042618:87 AK300971:87 AK290079:87 ENST00000527915.5:89 AK001980:89 BC172288:92 AJ236912:92 AF085734:97 LF334326:-168 MA569903:-168 LF334325:-360 MA569902:-360 LF210043:-466 MA445620:-466 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
− | |distance= | + | |distance=66 |
|distance_to_tss=-71 | |distance_to_tss=-71 | ||
|end=20343548 | |end=20343548 | ||
Line 13: | Line 13: | ||
|entrez_id=10038 | |entrez_id=10038 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
− | |gene_alias=ADPRT2 | + | |gene_alias=ADPRT2{{!}}ADPRTL2{{!}}ADPRTL3{{!}}ARTD2{{!}}PARP-2{{!}}pADPRT-2 |
|gene_description=poly(ADP-ribose) polymerase 2 | |gene_description=poly(ADP-ribose) polymerase 2 | ||
|gene_id=10038 | |gene_id=10038 | ||
− | |gene_name= | + | |gene_name=PARP2 |
|gene_source=HGNC:272 | |gene_source=HGNC:272 | ||
|gene_symbol=PARP2 | |gene_symbol=PARP2 | ||
Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:272 | |hgnc_mgi_id=HGNC:272 | ||
|nearest_ensembl=ENSG00000129484 | |nearest_ensembl=ENSG00000129484 | ||
− | |nearest_promoter_id= | + | |nearest_promoter_id=NM_005484 |
|nearest_refseq=NM_005484 | |nearest_refseq=NM_005484 | ||
|nearest_unigene=Hs.409412 | |nearest_unigene=Hs.409412 | ||
− | |num_trans= | + | |num_trans=20 |
|pADPRT-2= | |pADPRT-2= | ||
|species=human | |species=human | ||
Line 32: | Line 32: | ||
|start_of_center_position=20343542 | |start_of_center_position=20343542 | ||
|strand=+ | |strand=+ | ||
− | |transcript_name= | + | |transcript_name=LF384983 MA620560 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_138421.1 | |tss_id=hg_138421.1 |
Latest revision as of 07:00, 16 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 20343542 |
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End of the center position in the TSS region: | 20343543 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | LF384983 MA620560 |
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Distance: | 66 |
Num_trans: | 20 |
All_trans: | LF384983:66 MA620560:66 ENST00000250416.9:67 ENST00000529465.6:80 ENST00000429687.8:87 NM_005484:87 NM_001042618:87 AK300971:87 AK290079:87 ENST00000527915.5:89 AK001980:89 BC172288:92 AJ236912:92 AF085734:97 LF334326:-168 MA569903:-168 LF334325:-360 MA569902:-360 LF210043:-466 MA445620:-466 |
TATA-Box annotation
Distance to TSS: | -71 |
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Nearest PromoterID: | NM_005484 |
Entrez ID: | 10038 |
Nearest Unigene: | Hs.409412 |
Nearest Refseq: | NM_005484 |
Nearest Ensembl: | ENSG00000129484 |
Gene Name: | PARP2 |
Gene Alias: | ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2 |
Gene Description: | poly(ADP-ribose) polymerase 2 |
Gene Type: | protein-coding |
CpG%: | 0.07 |
GC%: | 0.557214 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |