Personal tools

Difference between revisions of "TSS:Hg 138421.1"

From referenceTSS

Jump to: navigation, search
 
Line 4: Line 4:
 
|ARTD2=
 
|ARTD2=
 
|PARP-2=
 
|PARP-2=
|all_trans=ENST00000429687.7:34 uc001vxd.4:34 NM_005484:66 NM_001042618:66 ENST00000250416.9:67 uc001vxc.4:67 ENST00000529465.6:80 uc058yrx.1:80 AK300971:87 AK290079:87 ENST00000527915.5:89 uc001vxb.2:89 AK001980:89 BC172288:92 AJ236912:92 AF085734:96
+
|all_trans=LF384983:66 MA620560:66 ENST00000250416.9:67 ENST00000529465.6:80 ENST00000429687.8:87 NM_005484:87 NM_001042618:87 AK300971:87 AK290079:87 ENST00000527915.5:89 AK001980:89 BC172288:92 AJ236912:92 AF085734:97 LF334326:-168 MA569903:-168 LF334325:-360 MA569902:-360 LF210043:-466 MA445620:-466
 
|chr=chr14
 
|chr=chr14
 
|cpg_percent=0.07
 
|cpg_percent=0.07
|distance=34
+
|distance=66
 
|distance_to_tss=-71
 
|distance_to_tss=-71
 
|end=20343548
 
|end=20343548
Line 13: Line 13:
 
|entrez_id=10038
 
|entrez_id=10038
 
|gc_percent=0.557214
 
|gc_percent=0.557214
|gene_alias=ADPRT2
+
|gene_alias=ADPRT2{{!}}ADPRTL2{{!}}ADPRTL3{{!}}ARTD2{{!}}PARP-2{{!}}pADPRT-2
 
|gene_description=poly(ADP-ribose) polymerase 2
 
|gene_description=poly(ADP-ribose) polymerase 2
 
|gene_id=10038
 
|gene_id=10038
|gene_name=poly(ADP-ribose) polymerase 2
+
|gene_name=PARP2
 
|gene_source=HGNC:272
 
|gene_source=HGNC:272
 
|gene_symbol=PARP2
 
|gene_symbol=PARP2
Line 23: Line 23:
 
|hgnc_mgi_id=HGNC:272
 
|hgnc_mgi_id=HGNC:272
 
|nearest_ensembl=ENSG00000129484
 
|nearest_ensembl=ENSG00000129484
|nearest_promoter_id=NM_001042618
+
|nearest_promoter_id=NM_005484
 
|nearest_refseq=NM_005484
 
|nearest_refseq=NM_005484
 
|nearest_unigene=Hs.409412
 
|nearest_unigene=Hs.409412
|num_trans=16
+
|num_trans=20
 
|pADPRT-2=
 
|pADPRT-2=
 
|species=human
 
|species=human
Line 32: Line 32:
 
|start_of_center_position=20343542
 
|start_of_center_position=20343542
 
|strand=+
 
|strand=+
|transcript_name=ENST00000429687.7 uc001vxd.4
+
|transcript_name=LF384983 MA620560
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_138421.1
 
|tss_id=hg_138421.1

Latest revision as of 07:00, 16 June 2021

Basic information about the TSS


TSS ID:hg_138421.1
Species:human
Chr:chr14
TSS Classification:yes
Start:20343537
End:20343548
Strand:+
TSS Score:1
Start of the center position in the TSS region:20343542
End of the center position in the TSS region:20343543



Gene and protein annotation


Transcript_name:LF384983 MA620560
Distance:66
GeneID:10038
HGNC/MGI_ID:HGNC:272
UniProt_ID:Q9UGN5
Gene_name:PARP2
Gene_symbol:PARP2
Gene_synonyms:
Gene_source:HGNC:272



Transcript annotation


Transcript_name:LF384983 MA620560
Distance:66
Num_trans:20
All_trans:LF384983:66 MA620560:66 ENST00000250416.9:67 ENST00000529465.6:80 ENST00000429687.8:87 NM_005484:87 NM_001042618:87 AK300971:87 AK290079:87 ENST00000527915.5:89 AK001980:89 BC172288:92 AJ236912:92 AF085734:97 LF334326:-168 MA569903:-168 LF334325:-360 MA569902:-360 LF210043:-466 MA445620:-466



TATA-Box annotation


Distance to TSS:-71
Nearest PromoterID:NM_005484
Entrez ID:10038
Nearest Unigene:Hs.409412
Nearest Refseq:NM_005484
Nearest Ensembl:ENSG00000129484
Gene Name:PARP2
Gene Alias:ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2
Gene Description:poly(ADP-ribose) polymerase 2
Gene Type:protein-coding
CpG%:0.07
GC%:0.557214
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):