Difference between revisions of "TSS:Hg 138423.1"
From referenceTSS
| Line 4: | Line 4: | ||
|ARTD2= | |ARTD2= | ||
|PARP-2= | |PARP-2= | ||
| − | |all_trans= | + | |all_trans=LF384983:24 MA620560:24 ENST00000250416.9:25 ENST00000529465.6:38 ENST00000429687.8:45 NM_005484:45 NM_001042618:45 AK300971:45 AK290079:45 ENST00000527915.5:47 AK001980:47 BC172288:50 AJ236912:50 AF085734:55 LF334326:-215 MA569903:-215 LF334325:-407 MA569902:-407 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance= | + | |distance=24 |
|distance_to_tss=-27 | |distance_to_tss=-27 | ||
|end=20343590 | |end=20343590 | ||
| Line 13: | Line 13: | ||
|entrez_id=10038 | |entrez_id=10038 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=ADPRT2 | + | |gene_alias=ADPRT2{{!}}ADPRTL2{{!}}ADPRTL3{{!}}ARTD2{{!}}PARP-2{{!}}pADPRT-2 |
|gene_description=poly(ADP-ribose) polymerase 2 | |gene_description=poly(ADP-ribose) polymerase 2 | ||
|gene_id=10038 | |gene_id=10038 | ||
| − | |gene_name= | + | |gene_name=PARP2 |
|gene_source=HGNC:272 | |gene_source=HGNC:272 | ||
|gene_symbol=PARP2 | |gene_symbol=PARP2 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:272 | |hgnc_mgi_id=HGNC:272 | ||
|nearest_ensembl=ENSG00000129484 | |nearest_ensembl=ENSG00000129484 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_005484 |
|nearest_refseq=NM_005484 | |nearest_refseq=NM_005484 | ||
|nearest_unigene=Hs.409412 | |nearest_unigene=Hs.409412 | ||
| − | |num_trans= | + | |num_trans=18 |
|pADPRT-2= | |pADPRT-2= | ||
|species=human | |species=human | ||
| Line 32: | Line 32: | ||
|start_of_center_position=20343587 | |start_of_center_position=20343587 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF384983 MA620560 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_138423.1 | |tss_id=hg_138423.1 | ||
Latest revision as of 07:00, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 20343587 |
|---|---|
| End of the center position in the TSS region: | 20343588 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF384983 MA620560 |
|---|---|
| Distance: | 24 |
| Num_trans: | 18 |
| All_trans: | LF384983:24 MA620560:24 ENST00000250416.9:25 ENST00000529465.6:38 ENST00000429687.8:45 NM_005484:45 NM_001042618:45 AK300971:45 AK290079:45 ENST00000527915.5:47 AK001980:47 BC172288:50 AJ236912:50 AF085734:55 LF334326:-215 MA569903:-215 LF334325:-407 MA569902:-407 |
TATA-Box annotation
| Distance to TSS: | -27 |
|---|---|
| Nearest PromoterID: | NM_005484 |
| Entrez ID: | 10038 |
| Nearest Unigene: | Hs.409412 |
| Nearest Refseq: | NM_005484 |
| Nearest Ensembl: | ENSG00000129484 |
| Gene Name: | PARP2 |
| Gene Alias: | ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2 |
| Gene Description: | poly(ADP-ribose) polymerase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
