Difference between revisions of "TSS:Hg 140411.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AB464295:71 BC160145:71 BC047950:-84 ENST00000256367. | + | |all_trans=AB464295:71 BC160145:71 BC047950:-84 ENST00000256367.3:-133 NM_015351:-133 D86980:-262 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.185 | |cpg_percent=0.185 | ||
|distance=71 | |distance=71 | ||
| − | |distance_to_tss= | + | |distance_to_tss=138 |
|end=70642059 | |end=70642059 | ||
|end_of_center_position=70642054 | |end_of_center_position=70642054 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_015351 | |nearest_refseq=NM_015351 | ||
|nearest_unigene=Hs.79170 | |nearest_unigene=Hs.79170 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=70642048 | |start=70642048 | ||
|start_of_center_position=70642053 | |start_of_center_position=70642053 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-6(GCTTTTAAACCC,+,0.00) |
|transcript_name=AB464295 BC160145 | |transcript_name=AB464295 BC160145 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 07:46, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 70642053 |
|---|---|
| End of the center position in the TSS region: | 70642054 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AB464295 BC160145 |
|---|---|
| Distance: | 71 |
| Num_trans: | 6 |
| All_trans: | AB464295:71 BC160145:71 BC047950:-84 ENST00000256367.3:-133 NM_015351:-133 D86980:-262 |
TATA-Box annotation
| Distance to TSS: | 138 |
|---|---|
| Nearest PromoterID: | NM_015351 |
| Entrez ID: | 23508 |
| Nearest Unigene: | Hs.79170 |
| Nearest Refseq: | NM_015351 |
| Nearest Ensembl: | ENSG00000133985 |
| Gene Name: | tetratricopeptide repeat domain 9 |
| Gene Alias: | TTC9A |
| Gene Description: | tetratricopeptide repeat domain 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.185 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -6(GCTTTTAAACCC,+,0.00) |
