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Difference between revisions of "TSS:Hg 140860.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 
|LGR3=
 
|LGR3=
|all_trans=ENST00000541158.6:-42 uc059dxz.1:-42 ENST00000557096.1:-96 uc059dxy.1:-96 AK303378:278 ENST00000342443.10:344 uc001xvc.4:344 BC024205:344 ENST00000298171.6:438 NM_000369:438 NM_001142626:438 NM_001018036:438 uc001xvd.1:438 ENST00000553763.1:494 uc059dya.1:494 M31774:495
+
|all_trans=ENST00000541158.6:-42 ENST00000557096.1:-96 AK303378:278 ENST00000342443.10:344 BC024205:344 MB483350:438 ENST00000553763.1:494 M31774:495
 
|chr=chr14
 
|chr=chr14
 
|cpg_percent=0.075
 
|cpg_percent=0.075
 
|distance=-42
 
|distance=-42
|distance_to_tss=-439
+
|distance_to_tss=-535
 
|end=80955087
 
|end=80955087
 
|end_of_center_position=80955086
 
|end_of_center_position=80955086
 
|entrez_id=7253
 
|entrez_id=7253
 
|gc_percent=0.671642
 
|gc_percent=0.671642
|gene_alias=CHNG1
+
|gene_alias=CHNG1{{!}}LGR3{{!}}hTSHR-I
 
|gene_description=thyroid stimulating hormone receptor
 
|gene_description=thyroid stimulating hormone receptor
 
|gene_id=7253
 
|gene_id=7253
Line 24: Line 24:
 
|nearest_refseq=NM_000369
 
|nearest_refseq=NM_000369
 
|nearest_unigene=Hs.160411
 
|nearest_unigene=Hs.160411
|num_trans=16
+
|num_trans=8
 
|species=human
 
|species=human
 
|start=80955084
 
|start=80955084
 
|start_of_center_position=80955085
 
|start_of_center_position=80955085
 
|strand=+
 
|strand=+
|transcript_name=ENST00000541158.6 uc059dxz.1
+
|transcript_name=ENST00000541158.6
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_140860.1
 
|tss_id=hg_140860.1

Revision as of 07:57, 16 June 2021

Basic information about the TSS


TSS ID:hg_140860.1
Species:human
Chr:chr14
TSS Classification:yes
Start:80955084
End:80955087
Strand:+
TSS Score:1
Start of the center position in the TSS region:80955085
End of the center position in the TSS region:80955086



Gene and protein annotation


Transcript_name:ENST00000541158.6
Distance:-42
GeneID:7253
HGNC/MGI_ID:HGNC:12373
UniProt_ID:A0A0A0MTJ0
Gene_name:thyroid stimulating hormone receptor
Gene_symbol:TSHR
Gene_synonyms:LGR3
Gene_source:HGNC:12373



Transcript annotation


Transcript_name:ENST00000541158.6
Distance:-42
Num_trans:8
All_trans:ENST00000541158.6:-42 ENST00000557096.1:-96 AK303378:278 ENST00000342443.10:344 BC024205:344 MB483350:438 ENST00000553763.1:494 M31774:495



TATA-Box annotation


Distance to TSS:-535
Nearest PromoterID:NM_001018036
Entrez ID:7253
Nearest Unigene:Hs.160411
Nearest Refseq:NM_000369
Nearest Ensembl:ENSG00000165409
Gene Name:thyroid stimulating hormone receptor
Gene Alias:CHNG1|LGR3|hTSHR-I
Gene Description:thyroid stimulating hormone receptor
Gene Type:protein-coding
CpG%:0.075
GC%:0.671642
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):