Difference between revisions of "TSS:Hg 141887.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|PACS1L= | |PACS1L= | ||
| − | |all_trans=ENST00000447393. | + | |all_trans=ENST00000447393.6:0 NM_015197:0 NM_001100913:0 AB011174:0 BC065220:38 BC050351:118 ENST00000547217.5:123 ENST00000548265.1:126 AB385359:151 ENST00000325438.12:-297 AY320284:-297 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.225 | |cpg_percent=0.225 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-10 |
|end=105314764 | |end=105314764 | ||
|end_of_center_position=105314738 | |end_of_center_position=105314738 | ||
|entrez_id=23241 | |entrez_id=23241 | ||
|gc_percent=0.895522 | |gc_percent=0.895522 | ||
| − | |gene_alias=PACS-2 | + | |gene_alias=EIEE66{{!}}PACS-2{{!}}PACS1L |
|gene_description=phosphofurin acidic cluster sorting protein 2 | |gene_description=phosphofurin acidic cluster sorting protein 2 | ||
|gene_id=23241 | |gene_id=23241 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_015197 | |nearest_refseq=NM_015197 | ||
|nearest_unigene=Hs.525626 | |nearest_unigene=Hs.525626 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=105314711 | |start=105314711 | ||
|start_of_center_position=105314737 | |start_of_center_position=105314737 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000447393. | + | |transcript_name=ENST00000447393.6 NM_015197 NM_001100913 AB011174 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_141887.1 | |tss_id=hg_141887.1 | ||
Revision as of 08:21, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 105314737 |
|---|---|
| End of the center position in the TSS region: | 105314738 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000447393.6 NM_015197 NM_001100913 AB011174 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000447393.6:0 NM_015197:0 NM_001100913:0 AB011174:0 BC065220:38 BC050351:118 ENST00000547217.5:123 ENST00000548265.1:126 AB385359:151 ENST00000325438.12:-297 AY320284:-297 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_001100913 |
| Entrez ID: | 23241 |
| Nearest Unigene: | Hs.525626 |
| Nearest Refseq: | NM_015197 |
| Nearest Ensembl: | ENSG00000179364 |
| Gene Name: | phosphofurin acidic cluster sorting protein 2 |
| Gene Alias: | EIEE66|PACS-2|PACS1L |
| Gene Description: | phosphofurin acidic cluster sorting protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.225 |
| GC%: | 0.895522 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
