Difference between revisions of "TSS:Hg 141889.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|PACS1L= | |PACS1L= | ||
| − | |all_trans=AB385359:4 ENST00000548265 | + | |all_trans=AB385359:4 ENST00000548265.1:-13 ENST00000547217.5:-16 BC050351:-21 BC065220:-101 ENST00000447393.6:-155 NM_015197:-155 NM_001100913:-155 AB011174:-159 ENST00000325438.12:-488 AY320284:-488 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.185 | |cpg_percent=0.185 | ||
|distance=4 | |distance=4 | ||
| − | |distance_to_tss= | + | |distance_to_tss=159 |
|end=105314911 | |end=105314911 | ||
|end_of_center_position=105314907 | |end_of_center_position=105314907 | ||
|entrez_id=23241 | |entrez_id=23241 | ||
|gc_percent=0.835821 | |gc_percent=0.835821 | ||
| − | |gene_alias=PACS-2 | + | |gene_alias=EIEE66{{!}}PACS-2{{!}}PACS1L |
|gene_description=phosphofurin acidic cluster sorting protein 2 | |gene_description=phosphofurin acidic cluster sorting protein 2 | ||
|gene_id=23241 | |gene_id=23241 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:23794 | |hgnc_mgi_id=HGNC:23794 | ||
|nearest_ensembl=ENSG00000179364 | |nearest_ensembl=ENSG00000179364 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_015197 |
|nearest_refseq=NM_015197 | |nearest_refseq=NM_015197 | ||
|nearest_unigene=Hs.525626 | |nearest_unigene=Hs.525626 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=105314902 | |start=105314902 | ||
Revision as of 08:21, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 105314906 |
|---|---|
| End of the center position in the TSS region: | 105314907 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB385359 |
|---|---|
| Distance: | 4 |
| Num_trans: | 11 |
| All_trans: | AB385359:4 ENST00000548265.1:-13 ENST00000547217.5:-16 BC050351:-21 BC065220:-101 ENST00000447393.6:-155 NM_015197:-155 NM_001100913:-155 AB011174:-159 ENST00000325438.12:-488 AY320284:-488 |
TATA-Box annotation
| Distance to TSS: | 159 |
|---|---|
| Nearest PromoterID: | NM_015197 |
| Entrez ID: | 23241 |
| Nearest Unigene: | Hs.525626 |
| Nearest Refseq: | NM_015197 |
| Nearest Ensembl: | ENSG00000179364 |
| Gene Name: | phosphofurin acidic cluster sorting protein 2 |
| Gene Alias: | EIEE66|PACS-2|PACS1L |
| Gene Description: | phosphofurin acidic cluster sorting protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.185 |
| GC%: | 0.835821 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
