Difference between revisions of "TSS:Hg 145183.1"
From referenceTSS
| Line 9: | Line 9: | ||
|TF3B90= | |TF3B90= | ||
|TFIIIB90= | |TFIIIB90= | ||
| − | |all_trans=ENST00000549655.5 | + | |all_trans=ENST00000549655.5:129 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 18: | Line 18: | ||
|entrez_id=2972 | |entrez_id=2972 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=BRF | + | |gene_alias=BRF{{!}}BRF-1{{!}}CFDS{{!}}GTF3B{{!}}HEL-S-76p{{!}}TAF3B2{{!}}TAF3C{{!}}TAFIII90{{!}}TF3B90{{!}}TFIIIB90{{!}}hBRF |
| − | |gene_description= | + | |gene_description=BRF1 RNA polymerase III transcription initiation factor subunit |
|gene_id=2972 | |gene_id=2972 | ||
| − | |gene_name= | + | |gene_name=ZFP36 ring finger protein like 1 |
| − | |gene_source=HGNC:1107 | + | |gene_source=HGNC:1107 |
| − | |gene_symbol= | + | |gene_symbol=ZFP36L1 |
| − | |gene_synonyms= | + | |gene_synonyms=Berg36 ERF1 RNF162B TIS11B cMG1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hBRF= | |hBRF= | ||
| − | |hgnc_mgi_id=HGNC:1107 | + | |hgnc_mgi_id=HGNC:1107 |
|nearest_ensembl=ENSG00000185024 | |nearest_ensembl=ENSG00000185024 | ||
|nearest_promoter_id=NM_145685 | |nearest_promoter_id=NM_145685 | ||
|nearest_refseq=NM_001519 | |nearest_refseq=NM_001519 | ||
|nearest_unigene=Hs.424484 | |nearest_unigene=Hs.424484 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=105242733 | |start=105242733 | ||
|start_of_center_position=105242733 | |start_of_center_position=105242733 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-47(CAGTCTATAAGC,-,0.00) |
| − | |transcript_name=ENST00000549655.5 | + | |transcript_name=ENST00000549655.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_145183.1 | |tss_id=hg_145183.1 | ||
Revision as of 09:37, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 105242733 |
|---|---|
| End of the center position in the TSS region: | 105242734 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000549655.5 |
|---|---|
| Distance: | 129 |
| Num_trans: | 1 |
| All_trans: | ENST00000549655.5:129 |
TATA-Box annotation
| Distance to TSS: | 5151 |
|---|---|
| Nearest PromoterID: | NM_145685 |
| Entrez ID: | 2972 |
| Nearest Unigene: | Hs.424484 |
| Nearest Refseq: | NM_001519 |
| Nearest Ensembl: | ENSG00000185024 |
| Gene Name: | ZFP36 ring finger protein like 1 |
| Gene Alias: | BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF |
| Gene Description: | BRF1 RNA polymerase III transcription initiation factor subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -47(CAGTCTATAAGC,-,0.00) |
