Difference between revisions of "TSS:Hg 145559.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000557171.1:-20 | + | |all_trans=ENST00000557171.1:-20 ENST00000654579.1:-36 ENST00000383019.2:-93 NR_040082:-93 AK124933:-93 ENST00000669487.1:-102 ENST00000659855.1:-172 ENST00000659702.1:-334 |
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2346 |
|gene_id=100128714 | |gene_id=100128714 | ||
| − | |gene_name= | + | |gene_name=long intergenic non-protein coding RNA 2346 |
| − | |gene_source= | + | |gene_source=HGNC:53268 |
| − | |gene_symbol= | + | |gene_symbol=LINC02346 |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=HGNC:53268 |
|nearest_ensembl=ENSG00000206187 | |nearest_ensembl=ENSG00000206187 | ||
|nearest_promoter_id=NR_040082 | |nearest_promoter_id=NR_040082 | ||
|nearest_refseq=NR_040082 | |nearest_refseq=NR_040082 | ||
|nearest_unigene=Hs.587854 | |nearest_unigene=Hs.587854 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=25902452 | |start=25902452 | ||
|start_of_center_position=25902471 | |start_of_center_position=25902471 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000557171 | + | |transcript_name=ENST00000557171.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_145559.1 | |tss_id=hg_145559.1 | ||
Revision as of 09:46, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 25902471 |
|---|---|
| End of the center position in the TSS region: | 25902472 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000557171.1 |
|---|---|
| Distance: | -20 |
| Num_trans: | 8 |
| All_trans: | ENST00000557171.1:-20 ENST00000654579.1:-36 ENST00000383019.2:-93 NR_040082:-93 AK124933:-93 ENST00000669487.1:-102 ENST00000659855.1:-172 ENST00000659702.1:-334 |
TATA-Box annotation
| Distance to TSS: | 111 |
|---|---|
| Nearest PromoterID: | NR_040082 |
| Entrez ID: | 100128714 |
| Nearest Unigene: | Hs.587854 |
| Nearest Refseq: | NR_040082 |
| Nearest Ensembl: | ENSG00000206187 |
| Gene Name: | long intergenic non-protein coding RNA 2346 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2346 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
