Difference between revisions of "TSS:Hg 154456.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SMAP-8= | |SMAP-8= | ||
|SMAP8= | |SMAP8= | ||
| − | |all_trans=ENST00000258187.9:0 | + | |all_trans=ENST00000258187.9:0 ENST00000569404.5:22 ENST00000569539.5:28 ENST00000564126.5:31 ENST00000562764.5:-33 NM_020465:33 NM_001378342:33 NM_001378338:33 NM_001378345:33 NM_001378346:33 NM_001378339:33 ENST00000562725.5:34 ENST00000565304.5:41 ENST00000567667.5:43 AB021172:63 ENST00000564207.5:-294 ENST00000394282.8:342 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| Line 11: | Line 11: | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.840796 | |gc_percent=0.840796 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_020465 | |nearest_refseq=NM_020465 | ||
|nearest_unigene=Hs.322430 | |nearest_unigene=Hs.322430 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=58463663 | |start=58463663 | ||
|start_of_center_position=58463672 | |start_of_center_position=58463672 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000258187.9 | + | |transcript_name=ENST00000258187.9 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_154456.1 | |tss_id=hg_154456.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024R6V8 | + | |uniprot_id=A0A024R6V8 |
}} | }} | ||
Revision as of 13:11, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58463672 |
|---|---|
| End of the center position in the TSS region: | 58463673 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000258187.9 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000258187.9:0 ENST00000569404.5:22 ENST00000569539.5:28 ENST00000564126.5:31 ENST00000562764.5:-33 NM_020465:33 NM_001378342:33 NM_001378338:33 NM_001378345:33 NM_001378346:33 NM_001378339:33 ENST00000562725.5:34 ENST00000565304.5:41 ENST00000567667.5:43 AB021172:63 ENST00000564207.5:-294 ENST00000394282.8:342 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_020465 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1|SMAP-8|SMAP8 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.840796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
