Difference between revisions of "TSS:Hg 154457.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SMAP-8= | |SMAP-8= | ||
|SMAP8= | |SMAP8= | ||
| − | |all_trans=ENST00000569404.5:0 ENST00000569539.5:0 ENST00000564126.5:0 ENST00000562725.5:0 ENST00000565304.5:0 ENST00000567667.5:0 | + | |all_trans=ENST00000569404.5:0 ENST00000569539.5:0 ENST00000564126.5:0 ENST00000562725.5:0 ENST00000565304.5:0 ENST00000567667.5:0 NM_020465:0 NM_001378342:0 NM_001378338:0 NM_001378345:0 NM_001378346:0 NM_001378339:0 AB021172:0 ENST00000258187.9:-19 ENST00000562764.5:-53 ENST00000394282.8:260 ENST00000564207.5:-314 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| Line 11: | Line 11: | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_020465 | |nearest_refseq=NM_020465 | ||
|nearest_unigene=Hs.322430 | |nearest_unigene=Hs.322430 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=58463683 | |start=58463683 | ||
|start_of_center_position=58463723 | |start_of_center_position=58463723 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000569404.5 ENST00000569539.5 ENST00000564126.5 ENST00000562725.5 ENST00000565304.5 ENST00000567667.5 | + | |transcript_name=ENST00000569404.5 ENST00000569539.5 ENST00000564126.5 ENST00000562725.5 ENST00000565304.5 ENST00000567667.5 NM_020465 NM_001378342 NM_001378338 NM_001378345 NM_001378346 NM_001378339 AB021172 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_154457.1 | |tss_id=hg_154457.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=H3BM40 H3BMR6 H3BN53 H3BNK4 H3BU25 | + | |uniprot_id=H3BM40 H3BMR6 H3BN53 H3BNK4 H3BU25 Q9ULP0 |
}} | }} | ||
Revision as of 13:11, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58463723 |
|---|---|
| End of the center position in the TSS region: | 58463724 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000569404.5 ENST00000569539.5 ENST00000564126.5 ENST00000562725.5 ENST00000565304.5 ENST00000567667.5 NM_020465 NM_001378342 NM_001378338 NM_001378345 NM_001378346 NM_001378339 AB021172 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000569404.5:0 ENST00000569539.5:0 ENST00000564126.5:0 ENST00000562725.5:0 ENST00000565304.5:0 ENST00000567667.5:0 NM_020465:0 NM_001378342:0 NM_001378338:0 NM_001378345:0 NM_001378346:0 NM_001378339:0 AB021172:0 ENST00000258187.9:-19 ENST00000562764.5:-53 ENST00000394282.8:260 ENST00000564207.5:-314 |
TATA-Box annotation
| Distance to TSS: | 79 |
|---|---|
| Nearest PromoterID: | NM_020465 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1|SMAP-8|SMAP8 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
