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Difference between revisions of "TSS:Hg 154461.1"

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Line 2: Line 2:
 
|SMAP-8=
 
|SMAP-8=
 
|SMAP8=
 
|SMAP8=
−
|all_trans=ENST00000563317.5:0 ENST00000568464.5:0 ENST00000563022.5:0 ENST00000562930.5:0 ENST00000563978.5:0 ENST00000569923.5:0 ENST00000356752.8:0 ENST00000563799.5:0 ENST00000562999.5:0 ENST00000570248.5:0 ENST00000562731.5:0 ENST00000566585.5:0 ENST00000564960.1:0 ENST00000568424.1:0 NM_001242834:0 NR_040072:0 NM_001242836:0 NM_001242835:0 NM_001242833:0 uc059vbr.1:0 uc059vbs.1:0 uc059vbt.1:0 uc059vbu.1:0 uc059vbv.1:0 uc010vih.3:0 uc010vig.3:0 uc010cdk.4:0 uc059vbw.1:0 uc002eno.4:0 uc059vbx.1:0 uc059vby.1:0 uc059vbz.1:0 uc059vca.1:0 AK055038:0 AK296415:0 AK316089:0 AK299949:0 AK131248:0 AB044944:0 AB044945:0 BC011795:3 AB033006:5 AL136584:5 BC001527:7 AF308608:8 ENST00000568640.5:-29 uc010vii.3:-29 ENST00000565088.5:-46 uc059vbq.1:-46 ENST00000566192.5:-89 uc002enp.4:-89 AB385436:97 AM393094:97 AM393323:97 KJ903114:97 KU178760:97 KU178761:97
+
|all_trans=ENST00000563317.5:0 ENST00000568464.5:0 ENST00000563022.5:0 ENST00000562930.5:0 ENST00000563978.5:0 ENST00000569923.5:0 ENST00000356752.8:0 ENST00000563799.5:0 ENST00000562999.5:0 ENST00000570248.5:0 ENST00000562731.5:0 ENST00000566585.5:0 ENST00000564960.1:0 ENST00000568424.1:0 NM_001242836:0 NM_001242835:0 NR_040072:0 NM_001242834:0 NM_001378347:0 NM_001378344:0 NM_001242833:0 AK055038:0 AK296415:0 AK316089:0 AK299949:0 AK131248:0 AB044944:0 AB044945:0 BC011795:3 AB033006:5 AL136584:5 BC001527:7 AF308608:8 ENST00000568640.5:-29 ENST00000565088.5:-46 ENST00000566192.5:-89 AB385436:97 AM393094:97 AM393323:97 KU178760:97 KU178761:97 KJ903114:97
 
|chr=chr16
 
|chr=chr16
 
|cpg_percent=0.04
 
|cpg_percent=0.04
Line 11: Line 11:
 
|entrez_id=65009
 
|entrez_id=65009
 
|gc_percent=0.636816
 
|gc_percent=0.636816
−
|gene_alias=BDM1
+
|gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8
 
|gene_description=NDRG family member 4
 
|gene_description=NDRG family member 4
 
|gene_id=65009
 
|gene_id=65009
Line 24: Line 24:
 
|nearest_refseq=NM_020465
 
|nearest_refseq=NM_020465
 
|nearest_unigene=Hs.322430
 
|nearest_unigene=Hs.322430
−
|num_trans=57
+
|num_trans=42
 
|species=human
 
|species=human
 
|start=58500135
 
|start=58500135
 
|start_of_center_position=58500143
 
|start_of_center_position=58500143
 
|strand=+
 
|strand=+
−
|tata_box="-33(CTGTATAAATGG,-,0.00)"
+
|tata_box=-33(CTGTATAAATGG,-,0.00)
−
|transcript_name=ENST00000563317.5 ENST00000568464.5 ENST00000563022.5 ENST00000562930.5 ENST00000563978.5 ENST00000569923.5 ENST00000356752.8 ENST00000563799.5 ENST00000562999.5 ENST00000570248.5 ENST00000562731.5 ENST00000566585.5 ENST00000564960.1 ENST00000568424.1 NM_001242834 NR_040072 NM_001242836 NM_001242835 NM_001242833 uc059vbr.1 uc059vbs.1 uc059vbt.1 uc059vbu.1 uc059vbv.1 uc010vih.3 uc010vig.3 uc010cdk.4 uc059vbw.1 uc002eno.4 uc059vbx.1 uc059vby.1 uc059vbz.1 uc059vca.1 AK055038 AK296415 AK316089 AK299949 AK131248 AB044944 AB044945
+
|transcript_name=ENST00000563317.5 ENST00000568464.5 ENST00000563022.5 ENST00000562930.5 ENST00000563978.5 ENST00000569923.5 ENST00000356752.8 ENST00000563799.5 ENST00000562999.5 ENST00000570248.5 ENST00000562731.5 ENST00000566585.5 ENST00000564960.1 ENST00000568424.1 NM_001242836 NM_001242835 NR_040072 NM_001242834 NM_001378347 NM_001378344 NM_001242833 AK055038 AK296415 AK316089 AK299949 AK131248 AB044944 AB044945
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_154461.1
 
|tss_id=hg_154461.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=B7Z9X4 H3BMG5 H3BPY2 H3BQ01 H3BQJ4 H3BST8 H3BVB0 Q9ULP0
+
|uniprot_id=A0A0S2Z5R7 B7Z9X4 H3BMG5 H3BPY2 H3BQ01 H3BQJ4 H3BST8 H3BVB0 Q9ULP0
 
}}
 
}}

Revision as of 13:11, 16 June 2021

Basic information about the TSS

TSS ID:hg_154461.1
Species:human
Chr:chr16
TSS Classification:yes
Start:58500135
End:58500152
Strand:+
TSS Score:1
Start of the center position in the TSS region:58500143
End of the center position in the TSS region:58500144



Gene and protein annotation

Transcript_name:ENST00000563317.5 ENST00000568464.5 ENST00000563022.5 ENST00000562930.5 ENST00000563978.5 ENST00000569923.5 ENST00000356752.8 ENST00000563799.5 ENST00000562999.5 ENST00000570248.5 ENST00000562731.5 ENST00000566585.5 ENST00000564960.1 ENST00000568424.1 NM_001242836 NM_001242835 NR_040072 NM_001242834 NM_001378347 NM_001378344 NM_001242833 AK055038 AK296415 AK316089 AK299949 AK131248 AB044944 AB044945
Distance:0
GeneID:65009
HGNC/MGI_ID:HGNC:14466
UniProt_ID:A0A0S2Z5R7 B7Z9X4 H3BMG5 H3BPY2 H3BQ01 H3BQJ4 H3BST8 H3BVB0 Q9ULP0
Gene_name:NDRG family member 4
Gene_symbol:NDRG4
Gene_synonyms:KIAA1180 SMAP-8
Gene_source:HGNC:14466



Transcript annotation

Transcript_name:ENST00000563317.5 ENST00000568464.5 ENST00000563022.5 ENST00000562930.5 ENST00000563978.5 ENST00000569923.5 ENST00000356752.8 ENST00000563799.5 ENST00000562999.5 ENST00000570248.5 ENST00000562731.5 ENST00000566585.5 ENST00000564960.1 ENST00000568424.1 NM_001242836 NM_001242835 NR_040072 NM_001242834 NM_001378347 NM_001378344 NM_001242833 AK055038 AK296415 AK316089 AK299949 AK131248 AB044944 AB044945
Distance:0
Num_trans:42
All_trans:ENST00000563317.5:0 ENST00000568464.5:0 ENST00000563022.5:0 ENST00000562930.5:0 ENST00000563978.5:0 ENST00000569923.5:0 ENST00000356752.8:0 ENST00000563799.5:0 ENST00000562999.5:0 ENST00000570248.5:0 ENST00000562731.5:0 ENST00000566585.5:0 ENST00000564960.1:0 ENST00000568424.1:0 NM_001242836:0 NM_001242835:0 NR_040072:0 NM_001242834:0 NM_001378347:0 NM_001378344:0 NM_001242833:0 AK055038:0 AK296415:0 AK316089:0 AK299949:0 AK131248:0 AB044944:0 AB044945:0 BC011795:3 AB033006:5 AL136584:5 BC001527:7 AF308608:8 ENST00000568640.5:-29 ENST00000565088.5:-46 ENST00000566192.5:-89 AB385436:97 AM393094:97 AM393323:97 KU178760:97 KU178761:97 KJ903114:97



TATA-Box annotation

Distance to TSS:1
Nearest PromoterID:NM_001242836
Entrez ID:65009
Nearest Unigene:Hs.322430
Nearest Refseq:NM_020465
Nearest Ensembl:ENSG00000103034
Gene Name:NDRG family member 4
Gene Alias:BDM1|SMAP-8|SMAP8
Gene Description:NDRG family member 4
Gene Type:protein-coding
CpG%:0.04
GC%:0.636816
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-33(CTGTATAAATGG,-,0.00)
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