Difference between revisions of "TSS:Hg 154770.1"
From referenceTSS
| Line 5: | Line 5: | ||
|LCAM= | |LCAM= | ||
|UVO= | |UVO= | ||
| − | |all_trans=ENST00000569080. | + | |all_trans=ENST00000569080.2:0 ENST00000569117.1:311 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-41467 |
|end=68695833 | |end=68695833 | ||
|end_of_center_position=68695825 | |end_of_center_position=68695825 | ||
|entrez_id=999 | |entrez_id=999 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=Arc-1 | + | |gene_alias=Arc-1{{!}}BCDS1{{!}}CD324{{!}}CDHE{{!}}ECAD{{!}}LCAM{{!}}UVO |
|gene_description=cadherin 1 | |gene_description=cadherin 1 | ||
|gene_id=1001 | |gene_id=1001 | ||
| − | |gene_name=cadherin 15 | + | |gene_name=cadherin 15 |
| − | |gene_source=HGNC:1754 | + | |gene_source=HGNC:1754 |
| − | |gene_symbol=CDH15 | + | |gene_symbol=CDH15 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC:1754 | + | |hgnc_mgi_id=HGNC:1754 |
|nearest_ensembl=ENSG00000039068 | |nearest_ensembl=ENSG00000039068 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_004360 |
|nearest_refseq=NM_004360 | |nearest_refseq=NM_004360 | ||
|nearest_unigene=Hs.461086 | |nearest_unigene=Hs.461086 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=68695816 | |start=68695816 | ||
|start_of_center_position=68695824 | |start_of_center_position=68695824 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000569080. | + | |transcript_name=ENST00000569080.2 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_154770.1 | |tss_id=hg_154770.1 | ||
Revision as of 13:18, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68695824 |
|---|---|
| End of the center position in the TSS region: | 68695825 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000569080.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENST00000569080.2:0 ENST00000569117.1:311 |
TATA-Box annotation
| Distance to TSS: | -41467 |
|---|---|
| Nearest PromoterID: | NM_004360 |
| Entrez ID: | 999 |
| Nearest Unigene: | Hs.461086 |
| Nearest Refseq: | NM_004360 |
| Nearest Ensembl: | ENSG00000039068 |
| Gene Name: | cadherin 15 |
| Gene Alias: | Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO |
| Gene Description: | cadherin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
