Difference between revisions of "TSS:Hg 163681.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000574437.5 | + | |all_trans=ENST00000574437.5:-22 AK307827:-22 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=-22 | |distance=-22 | ||
| − | |distance_to_tss= | + | |distance_to_tss=847 |
|end=1125733 | |end=1125733 | ||
|end_of_center_position=1125726 | |end_of_center_position=1125726 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
|gene_alias=MDB | |gene_alias=MDB | ||
| − | |gene_description= | + | |gene_description=ABR activator of RhoGEF and GTPase |
|gene_id=29 | |gene_id=29 | ||
| − | |gene_name= | + | |gene_name=ABR activator of RhoGEF and GTPase |
|gene_source=HGNC:81 | |gene_source=HGNC:81 | ||
|gene_symbol=ABR | |gene_symbol=ABR | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001092 | |nearest_refseq=NM_001092 | ||
|nearest_unigene=Hs.159306 | |nearest_unigene=Hs.159306 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=1125717 | |start=1125717 | ||
|start_of_center_position=1125725 | |start_of_center_position=1125725 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(CCCTATAAAAAG,-,0.00) |
| − | |transcript_name=ENST00000574437.5 | + | |transcript_name=ENST00000574437.5 AK307827 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_163681.1 | |tss_id=hg_163681.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A1C7CYZ0 |
}} | }} | ||
Revision as of 16:44, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1125725 |
|---|---|
| End of the center position in the TSS region: | 1125726 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000574437.5 AK307827 |
|---|---|
| Distance: | -22 |
| Num_trans: | 2 |
| All_trans: | ENST00000574437.5:-22 AK307827:-22 |
TATA-Box annotation
| Distance to TSS: | 847 |
|---|---|
| Nearest PromoterID: | NM_001322840 |
| Entrez ID: | 29 |
| Nearest Unigene: | Hs.159306 |
| Nearest Refseq: | NM_001092 |
| Nearest Ensembl: | ENSG00000159842 |
| Gene Name: | ABR activator of RhoGEF and GTPase |
| Gene Alias: | MDB |
| Gene Description: | ABR activator of RhoGEF and GTPase |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CCCTATAAAAAG,-,0.00) |
