Difference between revisions of "TSS:Hg 163688.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK126882:0 ENST00000544583.6 | + | |all_trans=NM_001159746:0 AK126882:0 ENST00000544583.6:-36 AK124547:-36 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-3 |
|end=1187286 | |end=1187286 | ||
|end_of_center_position=1187275 | |end_of_center_position=1187275 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
|gene_alias=MDB | |gene_alias=MDB | ||
| − | |gene_description= | + | |gene_description=ABR activator of RhoGEF and GTPase |
|gene_id=29 | |gene_id=29 | ||
| − | |gene_name= | + | |gene_name=ABR activator of RhoGEF and GTPase |
|gene_source=HGNC:81 | |gene_source=HGNC:81 | ||
|gene_symbol=ABR | |gene_symbol=ABR | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001092 | |nearest_refseq=NM_001092 | ||
|nearest_unigene=Hs.159306 | |nearest_unigene=Hs.159306 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=1187263 | |start=1187263 | ||
|start_of_center_position=1187274 | |start_of_center_position=1187274 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-13(GTCCTTAAAGAG,-,0.00),-11(CCTTAAAGAGAC,+,0.00) |
| − | |transcript_name=AK126882 | + | |transcript_name=NM_001159746 AK126882 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_163688.1 | |tss_id=hg_163688.1 | ||
Revision as of 16:44, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 1187274 |
|---|---|
| End of the center position in the TSS region: | 1187275 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_001159746 AK126882 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | NM_001159746:0 AK126882:0 ENST00000544583.6:-36 AK124547:-36 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NM_001159746 |
| Entrez ID: | 29 |
| Nearest Unigene: | Hs.159306 |
| Nearest Refseq: | NM_001092 |
| Nearest Ensembl: | ENSG00000159842 |
| Gene Name: | ABR activator of RhoGEF and GTPase |
| Gene Alias: | MDB |
| Gene Description: | ABR activator of RhoGEF and GTPase |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -13(GTCCTTAAAGAG,-,0.00),-11(CCTTAAAGAGAC,+,0.00) |
