Difference between revisions of "TSS:Hg 163689.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000544583.6:-21 | + | |all_trans=ENST00000544583.6:-21 AK124547:-21 NM_001159746:25 AK126882:27 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=-21 | |distance=-21 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-27 |
|end=1187301 | |end=1187301 | ||
|end_of_center_position=1187299 | |end_of_center_position=1187299 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=MDB | |gene_alias=MDB | ||
| − | |gene_description= | + | |gene_description=ABR activator of RhoGEF and GTPase |
|gene_id=29 | |gene_id=29 | ||
| − | |gene_name= | + | |gene_name=ABR activator of RhoGEF and GTPase |
|gene_source=HGNC:81 | |gene_source=HGNC:81 | ||
|gene_symbol=ABR | |gene_symbol=ABR | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001092 | |nearest_refseq=NM_001092 | ||
|nearest_unigene=Hs.159306 | |nearest_unigene=Hs.159306 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=1187296 | |start=1187296 | ||
|start_of_center_position=1187298 | |start_of_center_position=1187298 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=11(GTCCTTAAAGAG,-,0.00),13(CCTTAAAGAGAC,+,0.00) |
| − | |transcript_name=ENST00000544583.6 | + | |transcript_name=ENST00000544583.6 AK124547 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_163689.1 | |tss_id=hg_163689.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q12979 | + | |uniprot_id=Q12979 |
}} | }} | ||
Revision as of 16:44, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1187298 |
|---|---|
| End of the center position in the TSS region: | 1187299 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000544583.6 AK124547 |
|---|---|
| Distance: | -21 |
| Num_trans: | 4 |
| All_trans: | ENST00000544583.6:-21 AK124547:-21 NM_001159746:25 AK126882:27 |
TATA-Box annotation
| Distance to TSS: | -27 |
|---|---|
| Nearest PromoterID: | NM_001159746 |
| Entrez ID: | 29 |
| Nearest Unigene: | Hs.159306 |
| Nearest Refseq: | NM_001092 |
| Nearest Ensembl: | ENSG00000159842 |
| Gene Name: | ABR activator of RhoGEF and GTPase |
| Gene Alias: | MDB |
| Gene Description: | ABR activator of RhoGEF and GTPase |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 11(GTCCTTAAAGAG,-,0.00),13(CCTTAAAGAGAC,+,0.00) |
