Difference between revisions of "TSS:Hg 163690.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000544583.6:0 | + | |all_trans=ENST00000544583.6:0 AK124547:0 NM_001159746:34 AK126882:36 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-44 |
|end=1187326 | |end=1187326 | ||
|end_of_center_position=1187316 | |end_of_center_position=1187316 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=MDB | |gene_alias=MDB | ||
| − | |gene_description= | + | |gene_description=ABR activator of RhoGEF and GTPase |
|gene_id=29 | |gene_id=29 | ||
| − | |gene_name= | + | |gene_name=ABR activator of RhoGEF and GTPase |
|gene_source=HGNC:81 | |gene_source=HGNC:81 | ||
|gene_symbol=ABR | |gene_symbol=ABR | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001092 | |nearest_refseq=NM_001092 | ||
|nearest_unigene=Hs.159306 | |nearest_unigene=Hs.159306 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=1187305 | |start=1187305 | ||
|start_of_center_position=1187315 | |start_of_center_position=1187315 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=28(GTCCTTAAAGAG,-,0.00),30(CCTTAAAGAGAC,+,0.00) |
| − | |transcript_name=ENST00000544583.6 | + | |transcript_name=ENST00000544583.6 AK124547 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_163690.1 | |tss_id=hg_163690.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q12979 | + | |uniprot_id=Q12979 |
}} | }} | ||
Revision as of 16:44, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1187315 |
|---|---|
| End of the center position in the TSS region: | 1187316 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000544583.6 AK124547 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | ENST00000544583.6:0 AK124547:0 NM_001159746:34 AK126882:36 |
TATA-Box annotation
| Distance to TSS: | -44 |
|---|---|
| Nearest PromoterID: | NM_001159746 |
| Entrez ID: | 29 |
| Nearest Unigene: | Hs.159306 |
| Nearest Refseq: | NM_001092 |
| Nearest Ensembl: | ENSG00000159842 |
| Gene Name: | ABR activator of RhoGEF and GTPase |
| Gene Alias: | MDB |
| Gene Description: | ABR activator of RhoGEF and GTPase |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 28(GTCCTTAAAGAG,-,0.00),30(CCTTAAAGAGAC,+,0.00) |
