Difference between revisions of "TSS:Hg 166014.1"
From referenceTSS
| Line 5: | Line 5: | ||
|PC2= | |PC2= | ||
|PCHC1= | |PCHC1= | ||
| − | |all_trans=ENST00000311208. | + | |all_trans=ENST00000311208.13:0 ENST00000491673.1:0 NM_000422:0 AK095342:0 AK304373:0 BC000159:9 BC056421:9 BC011901:11 X62571:11 BC072019:13 ENST00000540235.5:27 BC072018:27 DQ891101:54 DQ894283:54 AB528302:57 ENST00000577817.3:104 ENST00000463128.5:-259 LP896073:-259 CU687210:264 ENST00000493253.5:272 BX647923:272 EF608068:359 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=41624583 | |end=41624583 | ||
|end_of_center_position=41624576 | |end_of_center_position=41624576 | ||
|entrez_id=3872 | |entrez_id=3872 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=39.1 | + | |gene_alias=39.1{{!}}CK-17{{!}}K17{{!}}PC{{!}}PC2{{!}}PCHC1 |
|gene_description=keratin 17 | |gene_description=keratin 17 | ||
|gene_id=3872 | |gene_id=3872 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_000422 | |nearest_refseq=NM_000422 | ||
|nearest_unigene=Hs.2785 | |nearest_unigene=Hs.2785 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=41624567 | |start=41624567 | ||
|start_of_center_position=41624575 | |start_of_center_position=41624575 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(GCCTATAAAGGA,+,0.00),-35(GCCTATAAAGGA,-,0.00) |
| − | |transcript_name=ENST00000311208. | + | |transcript_name=ENST00000311208.13 ENST00000491673.1 NM_000422 AK095342 AK304373 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_166014.1 | |tss_id=hg_166014.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4E2P9 Q04695 | + | |uniprot_id=B4E2P9 Q04695 Q14666 |
}} | }} | ||
Revision as of 17:37, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 41624575 |
|---|---|
| End of the center position in the TSS region: | 41624576 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000311208.13 ENST00000491673.1 NM_000422 AK095342 AK304373 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000311208.13:0 ENST00000491673.1:0 NM_000422:0 AK095342:0 AK304373:0 BC000159:9 BC056421:9 BC011901:11 X62571:11 BC072019:13 ENST00000540235.5:27 BC072018:27 DQ891101:54 DQ894283:54 AB528302:57 ENST00000577817.3:104 ENST00000463128.5:-259 LP896073:-259 CU687210:264 ENST00000493253.5:272 BX647923:272 EF608068:359 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_000422 |
| Entrez ID: | 3872 |
| Nearest Unigene: | Hs.2785 |
| Nearest Refseq: | NM_000422 |
| Nearest Ensembl: | ENSG00000128422 |
| Gene Name: | keratin 17 |
| Gene Alias: | 39.1|CK-17|K17|PC|PC2|PCHC1 |
| Gene Description: | keratin 17 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GCCTATAAAGGA,+,0.00),-35(GCCTATAAAGGA,-,0.00) |
