Difference between revisions of "TSS:Hg 166015.1"
From referenceTSS
| Line 5: | Line 5: | ||
|PC2= | |PC2= | ||
|PCHC1= | |PCHC1= | ||
| − | |all_trans=ENST00000463128.5:-21 | + | |all_trans=ENST00000463128.5:-21 LP896073:-21 AK095342:226 ENST00000311208.13:228 ENST00000491673.1:228 NM_000422:228 AK304373:228 BC000159:244 BC056421:244 BC011901:246 X62571:246 BC072019:248 ENST00000540235.5:262 BC072018:262 DQ891101:289 DQ894283:289 AB528302:292 ENST00000577817.3:339 CU687210:499 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=-21 | |distance=-21 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-237 |
|end=41624821 | |end=41624821 | ||
|end_of_center_position=41624812 | |end_of_center_position=41624812 | ||
|entrez_id=3872 | |entrez_id=3872 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=39.1 | + | |gene_alias=39.1{{!}}CK-17{{!}}K17{{!}}PC{{!}}PC2{{!}}PCHC1 |
|gene_description=keratin 17 | |gene_description=keratin 17 | ||
|gene_id=3872 | |gene_id=3872 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_000422 | |nearest_refseq=NM_000422 | ||
|nearest_unigene=Hs.2785 | |nearest_unigene=Hs.2785 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=41624802 | |start=41624802 | ||
|start_of_center_position=41624811 | |start_of_center_position=41624811 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000463128.5 | + | |transcript_name=ENST00000463128.5 LP896073 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_166015.1 | |tss_id=hg_166015.1 | ||
Revision as of 17:37, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 41624811 |
|---|---|
| End of the center position in the TSS region: | 41624812 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000463128.5 LP896073 |
|---|---|
| Distance: | -21 |
| Num_trans: | 19 |
| All_trans: | ENST00000463128.5:-21 LP896073:-21 AK095342:226 ENST00000311208.13:228 ENST00000491673.1:228 NM_000422:228 AK304373:228 BC000159:244 BC056421:244 BC011901:246 X62571:246 BC072019:248 ENST00000540235.5:262 BC072018:262 DQ891101:289 DQ894283:289 AB528302:292 ENST00000577817.3:339 CU687210:499 |
TATA-Box annotation
| Distance to TSS: | -237 |
|---|---|
| Nearest PromoterID: | NM_000422 |
| Entrez ID: | 3872 |
| Nearest Unigene: | Hs.2785 |
| Nearest Refseq: | NM_000422 |
| Nearest Ensembl: | ENSG00000128422 |
| Gene Name: | keratin 17 |
| Gene Alias: | 39.1|CK-17|K17|PC|PC2|PCHC1 |
| Gene Description: | keratin 17 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
