Difference between revisions of "TSS:Hg 168700.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000574041.5:3 | + | |all_trans=ENST00000574041.5:3 ENST00000572301.1:28 ENST00000612902.5:73 ENST00000570301.6:-102 NR_164138:124 NR_164137:-124 ENST00000572077.6:-149 ENST00000664998.1:-149 ENST00000664400.1:-179 ENST00000669395.1:-187 ENST00000648736.1:-206 ENST00000659293.1:-206 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=3 | |distance=3 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-128 |
|end=81385258 | |end=81385258 | ||
|end_of_center_position=81385254 | |end_of_center_position=81385254 | ||
| Line 12: | Line 12: | ||
|gene_description=uncharacterized LOC100130370 | |gene_description=uncharacterized LOC100130370 | ||
|gene_id=100130370 | |gene_id=100130370 | ||
| − | |gene_name= | + | |gene_name=LOC100130370 |
|gene_source=EntrezGene:100130370 | |gene_source=EntrezGene:100130370 | ||
|gene_symbol=LOC100130370 | |gene_symbol=LOC100130370 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001347841 |
|nearest_refseq=NM_001272086 | |nearest_refseq=NM_001272086 | ||
|nearest_unigene=Hs.646594 | |nearest_unigene=Hs.646594 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=81385248 | |start=81385248 | ||
|start_of_center_position=81385253 | |start_of_center_position=81385253 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000574041.5 | + | |transcript_name=ENST00000574041.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_168700.1 | |tss_id=hg_168700.1 | ||
Latest revision as of 18:39, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 81385253 |
|---|---|
| End of the center position in the TSS region: | 81385254 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000574041.5 |
|---|---|
| Distance: | 3 |
| Num_trans: | 12 |
| All_trans: | ENST00000574041.5:3 ENST00000572301.1:28 ENST00000612902.5:73 ENST00000570301.6:-102 NR_164138:124 NR_164137:-124 ENST00000572077.6:-149 ENST00000664998.1:-149 ENST00000664400.1:-179 ENST00000669395.1:-187 ENST00000648736.1:-206 ENST00000659293.1:-206 |
TATA-Box annotation
| Distance to TSS: | -128 |
|---|---|
| Nearest PromoterID: | NM_001347841 |
| Entrez ID: | 100130370 |
| Nearest Unigene: | Hs.646594 |
| Nearest Refseq: | NM_001272086 |
| Nearest Ensembl: | |
| Gene Name: | LOC100130370 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100130370 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
