Difference between revisions of "TSS:Hg 168982.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000580437.5:0 ENST00000582563.5:0 ENST00000583093.5:0 ENST00000582290.5:0 | + | |all_trans=ENST00000269389.8:0 ENST00000580437.5:0 ENST00000582563.5:0 ENST00000583093.5:0 ENST00000582290.5:0 NM_003004:0 U77643:0 AK223104:0 AK312980:0 ENST00000581864.5:4 BC017716:13 AK223068:14 AK290708:-223 ENST00000581691.5:-299 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=82333775 | |end=82333775 | ||
|end_of_center_position=82333764 | |end_of_center_position=82333764 | ||
|entrez_id=6398 | |entrez_id=6398 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=K12 | + | |gene_alias=K12{{!}}SECTM |
|gene_description=secreted and transmembrane 1 | |gene_description=secreted and transmembrane 1 | ||
|gene_id=6398 | |gene_id=6398 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_003004 | |nearest_refseq=NM_003004 | ||
|nearest_unigene=Hs.558009 | |nearest_unigene=Hs.558009 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=82333751 | |start=82333751 | ||
|start_of_center_position=82333763 | |start_of_center_position=82333763 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000580437.5 ENST00000582563.5 ENST00000583093.5 ENST00000582290.5 | + | |transcript_name=ENST00000269389.8 ENST00000580437.5 ENST00000582563.5 ENST00000583093.5 ENST00000582290.5 NM_003004 U77643 AK223104 AK312980 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_168982.1 | |tss_id=hg_168982.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=J3KS40 J3KSN0 J3QKK2 J3QQU6 Q53G27 | + | |uniprot_id=J3KS40 J3KSN0 J3QKK2 J3QQU6 Q53G27 Q8WVN6 |
}} | }} | ||
Revision as of 18:45, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 82333763 |
|---|---|
| End of the center position in the TSS region: | 82333764 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000269389.8 ENST00000580437.5 ENST00000582563.5 ENST00000583093.5 ENST00000582290.5 NM_003004 U77643 AK223104 AK312980 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000269389.8:0 ENST00000580437.5:0 ENST00000582563.5:0 ENST00000583093.5:0 ENST00000582290.5:0 NM_003004:0 U77643:0 AK223104:0 AK312980:0 ENST00000581864.5:4 BC017716:13 AK223068:14 AK290708:-223 ENST00000581691.5:-299 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_003004 |
| Entrez ID: | 6398 |
| Nearest Unigene: | Hs.558009 |
| Nearest Refseq: | NM_003004 |
| Nearest Ensembl: | ENSG00000141574 |
| Gene Name: | secreted and transmembrane 1 |
| Gene Alias: | K12|SECTM |
| Gene Description: | secreted and transmembrane 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
