Difference between revisions of "TSS:Hg 169182.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TGIF= | |TGIF= | ||
| − | |all_trans=ENST00000405385.7 | + | |all_trans=NM_001278682:-21 ENST00000405385.7:32 ENST00000551557.1:-52 NM_001278684:88 NM_173208:88 NM_173209:88 ENST00000549253.5:-176 ENST00000407501.6:263 ENST00000546979.5:417 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=-21 |
|distance_to_tss=-47 | |distance_to_tss=-47 | ||
|end=3449619 | |end=3449619 | ||
| Line 10: | Line 10: | ||
|entrez_id=7050 | |entrez_id=7050 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=HPE4 | + | |gene_alias=HPE4{{!}}TGIF |
|gene_description=TGFB induced factor homeobox 1 | |gene_description=TGFB induced factor homeobox 1 | ||
|gene_id=7050 | |gene_id=7050 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003244 | |nearest_refseq=NM_003244 | ||
|nearest_unigene=Hs.373550 | |nearest_unigene=Hs.373550 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=3449588 | |start=3449588 | ||
|start_of_center_position=3449603 | |start_of_center_position=3449603 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001278682 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_169182.1 | |tss_id=hg_169182.1 | ||
Revision as of 18:50, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 3449603 |
|---|---|
| End of the center position in the TSS region: | 3449604 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_001278682 |
|---|---|
| Distance: | -21 |
| Num_trans: | 9 |
| All_trans: | NM_001278682:-21 ENST00000405385.7:32 ENST00000551557.1:-52 NM_001278684:88 NM_173208:88 NM_173209:88 ENST00000549253.5:-176 ENST00000407501.6:263 ENST00000546979.5:417 |
TATA-Box annotation
| Distance to TSS: | -47 |
|---|---|
| Nearest PromoterID: | NM_173208 |
| Entrez ID: | 7050 |
| Nearest Unigene: | Hs.373550 |
| Nearest Refseq: | NM_003244 |
| Nearest Ensembl: | ENSG00000177426 |
| Gene Name: | TGFB induced factor homeobox 1 |
| Gene Alias: | HPE4|TGIF |
| Gene Description: | TGFB induced factor homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
