Difference between revisions of "TSS:Hg 169193.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TGIF= | |TGIF= | ||
| − | |all_trans=CU689140:-156 AB527497:-156 DQ894751:-156 DQ891563:-156 KJ897666:-156 ENST00000549546.5 | + | |all_trans=CU689140:-156 AB527497:-156 DQ894751:-156 DQ891563:-156 KJ897666:-156 ENST00000549546.5:-412 ENST00000330513.10:-459 BC031268:-459 ENST00000345133.9:-466 AK307230:-467 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=-156 | |distance=-156 | ||
| − | |distance_to_tss= | + | |distance_to_tss=551 |
|end=3452152 | |end=3452152 | ||
|end_of_center_position=3452144 | |end_of_center_position=3452144 | ||
|entrez_id=7050 | |entrez_id=7050 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=HPE4 | + | |gene_alias=HPE4{{!}}TGIF |
|gene_description=TGFB induced factor homeobox 1 | |gene_description=TGFB induced factor homeobox 1 | ||
|gene_id=7050 | |gene_id=7050 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003244 | |nearest_refseq=NM_003244 | ||
|nearest_unigene=Hs.373550 | |nearest_unigene=Hs.373550 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=3452135 | |start=3452135 | ||
|start_of_center_position=3452143 | |start_of_center_position=3452143 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-32(GCTTTTCTGGCG,+,0.00) |
|transcript_name=CU689140 AB527497 DQ894751 DQ891563 KJ897666 | |transcript_name=CU689140 AB527497 DQ894751 DQ891563 KJ897666 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 18:50, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 3452143 |
|---|---|
| End of the center position in the TSS region: | 3452144 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | CU689140 AB527497 DQ894751 DQ891563 KJ897666 |
|---|---|
| Distance: | -156 |
| Num_trans: | 10 |
| All_trans: | CU689140:-156 AB527497:-156 DQ894751:-156 DQ891563:-156 KJ897666:-156 ENST00000549546.5:-412 ENST00000330513.10:-459 BC031268:-459 ENST00000345133.9:-466 AK307230:-467 |
TATA-Box annotation
| Distance to TSS: | 551 |
|---|---|
| Nearest PromoterID: | NM_173210 |
| Entrez ID: | 7050 |
| Nearest Unigene: | Hs.373550 |
| Nearest Refseq: | NM_003244 |
| Nearest Ensembl: | ENSG00000177426 |
| Gene Name: | TGFB induced factor homeobox 1 |
| Gene Alias: | HPE4|TGIF |
| Gene Description: | TGFB induced factor homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(GCTTTTCTGGCG,+,0.00) |
