Personal tools

Difference between revisions of "TSS:Hg 181880.1"

From referenceTSS

Jump to: navigation, search
Line 3: Line 3:
 
|SPK 2=
 
|SPK 2=
 
|SPK-2=
 
|SPK-2=
|all_trans=ENST00000084795.9:0 uc061auk.1:0 BC000374:0 CU692404:0 KJ905903:0 DQ891451:0 KJ897488:0 DQ894630:0 AB464158:0 DQ403032:57 ENST00000546623.5:71 uc061auo.1:71 DQ594017:481
+
|all_trans=ENST00000084795.9:0 BC000374:0 CU692404:0 KJ905903:0 DQ891451:0 KJ897488:0 DQ894630:0 AB464158:0 DQ403032:57 ENST00000546623.5:71 DQ594017:481
 
|chr=chr19
 
|chr=chr19
 
|cpg_percent=0.02
 
|cpg_percent=0.02
 
|distance=0
 
|distance=0
|distance_to_tss=-1413
+
|distance_to_tss=1300
 
|end=48617888
 
|end=48617888
 
|end_of_center_position=48617878
 
|end_of_center_position=48617878
|entrez_id=56848
+
|entrez_id=6141
 
|gc_percent=0.542289
 
|gc_percent=0.542289
|gene_alias=SK 2
+
|gene_alias=DBA18{{!}}L18
|gene_description=sphingosine kinase 2
+
|gene_description=ribosomal protein L18
 
|gene_id=6141
 
|gene_id=6141
 
|gene_name=ribosomal protein L18
 
|gene_name=ribosomal protein L18
Line 21: Line 21:
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 
|hgnc_mgi_id=HGNC:10310
 
|hgnc_mgi_id=HGNC:10310
|nearest_ensembl=ENSG00000063176
+
|nearest_ensembl=ENSG00000063177
|nearest_promoter_id=NM_001243876
+
|nearest_promoter_id=NR_073022
|nearest_refseq=NM_020126
+
|nearest_refseq=NM_000979
|nearest_unigene=Hs.528006
+
|nearest_unigene=Hs.515517
|num_trans=13
+
|num_trans=11
 
|species=human
 
|species=human
 
|start=48617867
 
|start=48617867
 
|start_of_center_position=48617877
 
|start_of_center_position=48617877
 
|strand=-
 
|strand=-
|transcript_name=ENST00000084795.9 uc061auk.1 BC000374 CU692404 KJ905903 DQ891451 KJ897488 DQ894630 AB464158
+
|transcript_name=ENST00000084795.9 BC000374 CU692404 KJ905903 DQ891451 KJ897488 DQ894630 AB464158
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_181880.1
 
|tss_id=hg_181880.1

Revision as of 23:41, 16 June 2021

Basic information about the TSS


TSS ID:hg_181880.1
Species:human
Chr:chr19
TSS Classification:yes
Start:48617867
End:48617888
Strand:-
TSS Score:1
Start of the center position in the TSS region:48617877
End of the center position in the TSS region:48617878



Gene and protein annotation


Transcript_name:ENST00000084795.9 BC000374 CU692404 KJ905903 DQ891451 KJ897488 DQ894630 AB464158
Distance:0
GeneID:6141
HGNC/MGI_ID:HGNC:10310
UniProt_ID:J3QQ67
Gene_name:ribosomal protein L18
Gene_symbol:RPL18
Gene_synonyms:L18
Gene_source:HGNC:10310



Transcript annotation


Transcript_name:ENST00000084795.9 BC000374 CU692404 KJ905903 DQ891451 KJ897488 DQ894630 AB464158
Distance:0
Num_trans:11
All_trans:ENST00000084795.9:0 BC000374:0 CU692404:0 KJ905903:0 DQ891451:0 KJ897488:0 DQ894630:0 AB464158:0 DQ403032:57 ENST00000546623.5:71 DQ594017:481



TATA-Box annotation


Distance to TSS:1300
Nearest PromoterID:NR_073022
Entrez ID:6141
Nearest Unigene:Hs.515517
Nearest Refseq:NM_000979
Nearest Ensembl:ENSG00000063177
Gene Name:ribosomal protein L18
Gene Alias:DBA18|L18
Gene Description:ribosomal protein L18
Gene Type:protein-coding
CpG%:0.02
GC%:0.542289
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):