Difference between revisions of "TSS:Hg 181880.1"
From referenceTSS
Line 3: | Line 3: | ||
|SPK 2= | |SPK 2= | ||
|SPK-2= | |SPK-2= | ||
− | |all_trans=ENST00000084795.9 | + | |all_trans=ENST00000084795.9:0 BC000374:0 CU692404:0 KJ905903:0 DQ891451:0 KJ897488:0 DQ894630:0 AB464158:0 DQ403032:57 ENST00000546623.5:71 DQ594017:481 |
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=0 | |distance=0 | ||
− | |distance_to_tss= | + | |distance_to_tss=1300 |
|end=48617888 | |end=48617888 | ||
|end_of_center_position=48617878 | |end_of_center_position=48617878 | ||
− | |entrez_id= | + | |entrez_id=6141 |
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
− | |gene_alias= | + | |gene_alias=DBA18{{!}}L18 |
− | |gene_description= | + | |gene_description=ribosomal protein L18 |
|gene_id=6141 | |gene_id=6141 | ||
|gene_name=ribosomal protein L18 | |gene_name=ribosomal protein L18 | ||
Line 21: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:10310 | |hgnc_mgi_id=HGNC:10310 | ||
− | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000063177 |
− | |nearest_promoter_id= | + | |nearest_promoter_id=NR_073022 |
− | |nearest_refseq= | + | |nearest_refseq=NM_000979 |
− | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.515517 |
− | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=48617867 | |start=48617867 | ||
|start_of_center_position=48617877 | |start_of_center_position=48617877 | ||
|strand=- | |strand=- | ||
− | |transcript_name=ENST00000084795.9 | + | |transcript_name=ENST00000084795.9 BC000374 CU692404 KJ905903 DQ891451 KJ897488 DQ894630 AB464158 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_181880.1 | |tss_id=hg_181880.1 |
Revision as of 23:41, 16 June 2021
Basic information about the TSS
|
|
Start of the center position in the TSS region: | 48617877 |
---|---|
End of the center position in the TSS region: | 48617878 |
Gene and protein annotation
|
|
Transcript annotation
Transcript_name: | ENST00000084795.9 BC000374 CU692404 KJ905903 DQ891451 KJ897488 DQ894630 AB464158 |
---|---|
Distance: | 0 |
Num_trans: | 11 |
All_trans: | ENST00000084795.9:0 BC000374:0 CU692404:0 KJ905903:0 DQ891451:0 KJ897488:0 DQ894630:0 AB464158:0 DQ403032:57 ENST00000546623.5:71 DQ594017:481 |
TATA-Box annotation
Distance to TSS: | 1300 |
---|---|
Nearest PromoterID: | NR_073022 |
Entrez ID: | 6141 |
Nearest Unigene: | Hs.515517 |
Nearest Refseq: | NM_000979 |
Nearest Ensembl: | ENSG00000063177 |
Gene Name: | ribosomal protein L18 |
Gene Alias: | DBA18|L18 |
Gene Description: | ribosomal protein L18 |
Gene Type: | protein-coding |
CpG%: | 0.02 |
GC%: | 0.542289 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |