Difference between revisions of "TSS:Hg 181881.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SPK 2= | |SPK 2= | ||
|SPK-2= | |SPK-2= | ||
| − | |all_trans=ENST00000552588.5:0 ENST00000551749.5:0 ENST00000547892.1:0 ENST00000549370.5:0 ENST00000549273.5:0 ENST00000552705.5:0 ENST00000550671.1:0 | + | |all_trans=ENST00000549920.6:0 ENST00000552588.5:0 ENST00000551749.5:0 ENST00000547892.1:0 ENST00000549370.5:0 ENST00000549273.5:0 ENST00000552705.5:0 ENST00000550671.1:0 NM_000979:0 NR_073022:0 NM_001270490:0 AK026558:0 BC021743:0 AK091257:0 AK293386:0 D28461:0 ENST00000547897.5:3 ENST00000552851.1:7 BC009708:7 BC051359:7 BC051837:7 ENST00000552347.5:8 ENST00000550645.5:8 L11566:13 ENST00000550973.5:44 LF367908:-264 MA603485:-264 |
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-2 |
|end=48619190 | |end=48619190 | ||
|end_of_center_position=48619181 | |end_of_center_position=48619181 | ||
| − | |entrez_id= | + | |entrez_id=6141 |
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias= | + | |gene_alias=DBA18{{!}}L18 |
| − | |gene_description= | + | |gene_description=ribosomal protein L18 |
|gene_id=6141 | |gene_id=6141 | ||
|gene_name=ribosomal protein L18 | |gene_name=ribosomal protein L18 | ||
| Line 21: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:10310 | |hgnc_mgi_id=HGNC:10310 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000063177 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_000979 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_000979 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.515517 |
| − | |num_trans= | + | |num_trans=27 |
|species=human | |species=human | ||
|start=48619170 | |start=48619170 | ||
|start_of_center_position=48619180 | |start_of_center_position=48619180 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000552588.5 ENST00000551749.5 ENST00000547892.1 ENST00000549370.5 ENST00000549273.5 ENST00000552705.5 ENST00000550671.1 | + | |transcript_name=ENST00000549920.6 ENST00000552588.5 ENST00000551749.5 ENST00000547892.1 ENST00000549370.5 ENST00000549273.5 ENST00000552705.5 ENST00000550671.1 NM_000979 NR_073022 NM_001270490 AK026558 BC021743 AK091257 AK293386 D28461 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_181881.1 | |tss_id=hg_181881.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DDY5 F8VXR6 G3V203 Q07020 | + | |uniprot_id=A0A024QZD1 B4DDY5 F8VXR6 G3V203 Q07020 |
}} | }} | ||
Revision as of 23:41, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48619180 |
|---|---|
| End of the center position in the TSS region: | 48619181 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000549920.6 ENST00000552588.5 ENST00000551749.5 ENST00000547892.1 ENST00000549370.5 ENST00000549273.5 ENST00000552705.5 ENST00000550671.1 NM_000979 NR_073022 NM_001270490 AK026558 BC021743 AK091257 AK293386 D28461 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000549920.6:0 ENST00000552588.5:0 ENST00000551749.5:0 ENST00000547892.1:0 ENST00000549370.5:0 ENST00000549273.5:0 ENST00000552705.5:0 ENST00000550671.1:0 NM_000979:0 NR_073022:0 NM_001270490:0 AK026558:0 BC021743:0 AK091257:0 AK293386:0 D28461:0 ENST00000547897.5:3 ENST00000552851.1:7 BC009708:7 BC051359:7 BC051837:7 ENST00000552347.5:8 ENST00000550645.5:8 L11566:13 ENST00000550973.5:44 LF367908:-264 MA603485:-264 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_000979 |
| Entrez ID: | 6141 |
| Nearest Unigene: | Hs.515517 |
| Nearest Refseq: | NM_000979 |
| Nearest Ensembl: | ENSG00000063177 |
| Gene Name: | ribosomal protein L18 |
| Gene Alias: | DBA18|L18 |
| Gene Description: | ribosomal protein L18 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
