Difference between revisions of "TSS:Hg 184192.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|P542= | |P542= | ||
| − | |all_trans= | + | |all_trans=ENST00000448364.5:-26 AK226085:39 ENST00000375114.7:-60 ENST00000413297.5:88 BC103753:191 ENST00000246194.8:197 NM_007367:197 NM_016732:197 AK299766:197 AF148457:212 ENST00000333552.9:239 AK222915:252 L38696:334 BC105018:343 AK291079:361 AK291054:367 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| − | |distance= | + | |distance=-26 |
| − | |distance_to_tss= | + | |distance_to_tss=-201 |
|end=33993714 | |end=33993714 | ||
|end_of_center_position=33993710 | |end_of_center_position=33993710 | ||
|entrez_id=22913 | |entrez_id=22913 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=HNRPCL2 | + | |gene_alias=HNRPCL2{{!}}P542 |
|gene_description=RALY heterogeneous nuclear ribonucleoprotein | |gene_description=RALY heterogeneous nuclear ribonucleoprotein | ||
|gene_id=22913 | |gene_id=22913 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:15921 | |hgnc_mgi_id=HGNC:15921 | ||
|nearest_ensembl=ENSG00000125970 | |nearest_ensembl=ENSG00000125970 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016732 |
|nearest_refseq=NM_007367 | |nearest_refseq=NM_007367 | ||
|nearest_unigene=Hs.136947 | |nearest_unigene=Hs.136947 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=33993705 | |start=33993705 | ||
|start_of_center_position=33993709 | |start_of_center_position=33993709 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000448364.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_184192.1 | |tss_id=hg_184192.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5QPM1 |
}} | }} | ||
Revision as of 00:34, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 33993709 |
|---|---|
| End of the center position in the TSS region: | 33993710 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000448364.5 |
|---|---|
| Distance: | -26 |
| Num_trans: | 16 |
| All_trans: | ENST00000448364.5:-26 AK226085:39 ENST00000375114.7:-60 ENST00000413297.5:88 BC103753:191 ENST00000246194.8:197 NM_007367:197 NM_016732:197 AK299766:197 AF148457:212 ENST00000333552.9:239 AK222915:252 L38696:334 BC105018:343 AK291079:361 AK291054:367 |
TATA-Box annotation
| Distance to TSS: | -201 |
|---|---|
| Nearest PromoterID: | NM_016732 |
| Entrez ID: | 22913 |
| Nearest Unigene: | Hs.136947 |
| Nearest Refseq: | NM_007367 |
| Nearest Ensembl: | ENSG00000125970 |
| Gene Name: | RALY heterogeneous nuclear ribonucleoprotein |
| Gene Alias: | HNRPCL2|P542 |
| Gene Description: | RALY heterogeneous nuclear ribonucleoprotein |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
