Difference between revisions of "TSS:Hg 184196.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|P542= | |P542= | ||
| − | |all_trans=BC103753:0 AK299766:0 AF148457:0 ENST00000333552.9 | + | |all_trans=ENST00000246194.8:0 NM_007367:0 NM_016732:0 BC103753:0 AK299766:0 AF148457:0 ENST00000333552.9:26 AK222915:39 ENST00000413297.5:-103 L38696:121 BC105018:130 AK291079:148 AK226085:-152 AK291054:154 ENST00000448364.5:-225 ENST00000375114.7:-259 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.18 | |cpg_percent=0.18 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=5 |
|end=33993927 | |end=33993927 | ||
|end_of_center_position=33993916 | |end_of_center_position=33993916 | ||
|entrez_id=22913 | |entrez_id=22913 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
| − | |gene_alias=HNRPCL2 | + | |gene_alias=HNRPCL2{{!}}P542 |
|gene_description=RALY heterogeneous nuclear ribonucleoprotein | |gene_description=RALY heterogeneous nuclear ribonucleoprotein | ||
|gene_id=22913 | |gene_id=22913 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_007367 | |nearest_refseq=NM_007367 | ||
|nearest_unigene=Hs.136947 | |nearest_unigene=Hs.136947 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=33993904 | |start=33993904 | ||
|start_of_center_position=33993915 | |start_of_center_position=33993915 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=BC103753 AK299766 AF148457 | + | |transcript_name=ENST00000246194.8 NM_007367 NM_016732 BC103753 AK299766 AF148457 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_184196.1 | |tss_id=hg_184196.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DSJ1 | + | |uniprot_id=B4DSJ1 Q9UKM9 |
}} | }} | ||
Revision as of 00:34, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 33993915 |
|---|---|
| End of the center position in the TSS region: | 33993916 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000246194.8 NM_007367 NM_016732 BC103753 AK299766 AF148457 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000246194.8:0 NM_007367:0 NM_016732:0 BC103753:0 AK299766:0 AF148457:0 ENST00000333552.9:26 AK222915:39 ENST00000413297.5:-103 L38696:121 BC105018:130 AK291079:148 AK226085:-152 AK291054:154 ENST00000448364.5:-225 ENST00000375114.7:-259 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_007367 |
| Entrez ID: | 22913 |
| Nearest Unigene: | Hs.136947 |
| Nearest Refseq: | NM_007367 |
| Nearest Ensembl: | ENSG00000125970 |
| Gene Name: | RALY heterogeneous nuclear ribonucleoprotein |
| Gene Alias: | HNRPCL2|P542 |
| Gene Description: | RALY heterogeneous nuclear ribonucleoprotein |
| Gene Type: | protein-coding |
| CpG%: | 0.18 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
