Difference between revisions of "TSS:Hg 184532.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AK056177:113 ENST00000373459.4:120 AL834410:131 ENST00000373461.9:136 NM_080607:136 ENST00000448944.1:151 BC033818:174 JF432582:359 AB528555:360 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|dJ1118M15.2= | |dJ1118M15.2= | ||
| − | |distance= | + | |distance=113 |
| − | |distance_to_tss=- | + | |distance_to_tss=-143 |
|end=37902991 | |end=37902991 | ||
|end_of_center_position=37902985 | |end_of_center_position=37902985 | ||
|entrez_id=128434 | |entrez_id=128434 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=C20orf102 | + | |gene_alias=C20orf102{{!}}dJ1118M15.2 |
|gene_description=V-set and transmembrane domain containing 2 like | |gene_description=V-set and transmembrane domain containing 2 like | ||
|gene_id=128434 | |gene_id=128434 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_080607 | |nearest_refseq=NM_080607 | ||
|nearest_unigene=Hs.517029 | |nearest_unigene=Hs.517029 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=37902977 | |start=37902977 | ||
|start_of_center_position=37902984 | |start_of_center_position=37902984 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(CGCTTTAAAAAT,-,0.00),-32(GCTTTAAAAATC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=AK056177 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_184532.1 | |tss_id=hg_184532.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 00:42, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 37902984 |
|---|---|
| End of the center position in the TSS region: | 37902985 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK056177 |
|---|---|
| Distance: | 113 |
| Num_trans: | 9 |
| All_trans: | AK056177:113 ENST00000373459.4:120 AL834410:131 ENST00000373461.9:136 NM_080607:136 ENST00000448944.1:151 BC033818:174 JF432582:359 AB528555:360 |
TATA-Box annotation
| Distance to TSS: | -143 |
|---|---|
| Nearest PromoterID: | NM_080607 |
| Entrez ID: | 128434 |
| Nearest Unigene: | Hs.517029 |
| Nearest Refseq: | NM_080607 |
| Nearest Ensembl: | ENSG00000132821 |
| Gene Name: | V-set and transmembrane domain containing 2 like |
| Gene Alias: | C20orf102|dJ1118M15.2 |
| Gene Description: | V-set and transmembrane domain containing 2 like |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(CGCTTTAAAAAT,-,0.00),-32(GCTTTAAAAATC,+,0.00) |
