Difference between revisions of "TSS:Hg 184620.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AK001840:0 NR_145524:-35 NR_145525:-35 AK023614:-35 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=47 |
|end=40980773 | |end=40980773 | ||
|end_of_center_position=40980761 | |end_of_center_position=40980761 | ||
| Line 16: | Line 16: | ||
|gene_symbol=LOC100128988 | |gene_symbol=LOC100128988 | ||
|gene_synonyms= | |gene_synonyms= | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_145524 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_145524 |
|nearest_unigene=Hs.636443 | |nearest_unigene=Hs.636443 | ||
|num_trans=4 | |num_trans=4 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=40980760 | |start_of_center_position=40980760 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK001840 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_184620.1 | |tss_id=hg_184620.1 | ||
Revision as of 00:44, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 40980760 |
|---|---|
| End of the center position in the TSS region: | 40980761 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK001840 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | AK001840:0 NR_145524:-35 NR_145525:-35 AK023614:-35 |
TATA-Box annotation
| Distance to TSS: | 47 |
|---|---|
| Nearest PromoterID: | NR_145524 |
| Entrez ID: | 100128988 |
| Nearest Unigene: | Hs.636443 |
| Nearest Refseq: | NR_145524 |
| Nearest Ensembl: | |
| Gene Name: | uncharacterized LOC100128988 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100128988 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
