Difference between revisions of "TSS:Hg 188115.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CTCF-T= | |CTCF-T= | ||
|HMGB1L1= | |HMGB1L1= | ||
| − | |all_trans=NM_001269043:0 NM_001269054:0 NM_001269049:0 BC060763:0 AK313990:0 ENST00000423479.7:17 ENST00000502686.6:17 ENST00000433949.7:17 ENST00000539382.5:17 ENST00000608903.5:17 ENST00000608858.5:17 ENST00000608108.1 | + | |all_trans=NM_001269043:0 NM_001269054:0 NM_001269049:0 NM_001269050:0 NM_001269055:0 BC060763:0 AK313990:0 ENST00000423479.7:17 ENST00000502686.6:17 ENST00000433949.7:17 ENST00000539382.5:17 ENST00000608903.5:17 ENST00000608858.5:17 ENST00000608108.1:17 DQ778111:26 AF336042:26 DQ778124:26 DQ778125:26 DQ778126:26 DQ778127:26 DQ778128:26 DQ778129:26 BC130486:41 ENST00000243914.7:-57 AK128070:-57 ENST00000608263.5:257 ENST00000426658.6:257 ENST00000422109.6:257 ENST00000432255.6:257 ENST00000608720.5:257 ENST00000607923.5:257 ENST00000608158.5:257 NM_001269041:257 NM_001269044:257 NR_072975:257 NM_001269048:257 NM_001269052:257 DQ778110:257 DQ778115:257 DQ778116:257 DQ778117:257 DQ778118:257 DQ778121:257 DQ778119:257 DQ778120:257 DQ778114:257 DQ294738:-425 ENST00000371196.6:-427 AY071919:-427 ENST00000609232.5:-500 ENST00000429804.7:-500 ENST00000422869.6:-500 ENST00000608425.5:-500 ENST00000481655.2:-500 NM_001269040:-500 NM_001269042:-500 NM_001269046:-500 NM_080618:-500 NM_001269047:-500 NM_001269045:-500 NM_001269051:-500 DQ778108:-500 DQ778109:-500 DQ778112:-500 DQ778122:-500 DQ778123:-500 DQ778113:-500 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|dJ579F20.2= | |dJ579F20.2= | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=2 |
|end=57525152 | |end=57525152 | ||
|end_of_center_position=57525138 | |end_of_center_position=57525138 | ||
|entrez_id=140690 | |entrez_id=140690 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=BORIS | + | |gene_alias=BORIS{{!}}CT27{{!}}CTCF-T{{!}}HMGB1L1{{!}}dJ579F20.2 |
|gene_description=CCCTC-binding factor like | |gene_description=CCCTC-binding factor like | ||
|gene_id=140690 | |gene_id=140690 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:16234 | |hgnc_mgi_id=HGNC:16234 | ||
|nearest_ensembl=ENSG00000124092 | |nearest_ensembl=ENSG00000124092 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001269055 |
|nearest_refseq=NM_080618 | |nearest_refseq=NM_080618 | ||
|nearest_unigene=Hs.131543 | |nearest_unigene=Hs.131543 | ||
| − | |num_trans= | + | |num_trans=67 |
|species=human | |species=human | ||
|start=57525123 | |start=57525123 | ||
|start_of_center_position=57525137 | |start_of_center_position=57525137 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_001269043 NM_001269054 NM_001269049 BC060763 AK313990 | + | |transcript_name=NM_001269043 NM_001269054 NM_001269049 NM_001269050 NM_001269055 BC060763 AK313990 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_188115.1 | |tss_id=hg_188115.1 | ||
Revision as of 02:05, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 57525137 |
|---|---|
| End of the center position in the TSS region: | 57525138 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001269043 NM_001269054 NM_001269049 NM_001269050 NM_001269055 BC060763 AK313990 |
|---|---|
| Distance: | 0 |
| Num_trans: | 67 |
| All_trans: | NM_001269043:0 NM_001269054:0 NM_001269049:0 NM_001269050:0 NM_001269055:0 BC060763:0 AK313990:0 ENST00000423479.7:17 ENST00000502686.6:17 ENST00000433949.7:17 ENST00000539382.5:17 ENST00000608903.5:17 ENST00000608858.5:17 ENST00000608108.1:17 DQ778111:26 AF336042:26 DQ778124:26 DQ778125:26 DQ778126:26 DQ778127:26 DQ778128:26 DQ778129:26 BC130486:41 ENST00000243914.7:-57 AK128070:-57 ENST00000608263.5:257 ENST00000426658.6:257 ENST00000422109.6:257 ENST00000432255.6:257 ENST00000608720.5:257 ENST00000607923.5:257 ENST00000608158.5:257 NM_001269041:257 NM_001269044:257 NR_072975:257 NM_001269048:257 NM_001269052:257 DQ778110:257 DQ778115:257 DQ778116:257 DQ778117:257 DQ778118:257 DQ778121:257 DQ778119:257 DQ778120:257 DQ778114:257 DQ294738:-425 ENST00000371196.6:-427 AY071919:-427 ENST00000609232.5:-500 ENST00000429804.7:-500 ENST00000422869.6:-500 ENST00000608425.5:-500 ENST00000481655.2:-500 NM_001269040:-500 NM_001269042:-500 NM_001269046:-500 NM_080618:-500 NM_001269047:-500 NM_001269045:-500 NM_001269051:-500 DQ778108:-500 DQ778109:-500 DQ778112:-500 DQ778122:-500 DQ778123:-500 DQ778113:-500 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_001269055 |
| Entrez ID: | 140690 |
| Nearest Unigene: | Hs.131543 |
| Nearest Refseq: | NM_080618 |
| Nearest Ensembl: | ENSG00000124092 |
| Gene Name: | CCCTC-binding factor like |
| Gene Alias: | BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 |
| Gene Description: | CCCTC-binding factor like |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
