Difference between revisions of "TSS:Hg 189956.1"
From referenceTSS
| Line 4: | Line 4: | ||
|CF6= | |CF6= | ||
|F6= | |F6= | ||
| − | |all_trans=S41243:259 S41242:259 | + | |all_trans=LF339738:161 MA575315:161 LF339739:-234 MA575316:-234 S41243:259 S41242:259 LF339737:303 MA575314:303 LF339740:-440 MA575317:-440 |
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=161 |
|distance_to_tss=-145497 | |distance_to_tss=-145497 | ||
|end=25881156 | |end=25881156 | ||
| Line 13: | Line 13: | ||
|entrez_id=522 | |entrez_id=522 | ||
|gc_percent=0.343284 | |gc_percent=0.343284 | ||
| − | |gene_alias=ATP5 | + | |gene_alias=ATP5{{!}}ATP5A{{!}}ATP5J{{!}}ATPM{{!}}CF6{{!}}F6 |
| − | |gene_description= | + | |gene_description=ATP synthase peripheral stalk subunit F6 |
|gene_id=351 | |gene_id=351 | ||
| − | |gene_name= | + | |gene_name=ATP5PF |
|gene_source=HGNC:620 | |gene_source=HGNC:620 | ||
|gene_symbol=APP | |gene_symbol=APP | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:620 | |hgnc_mgi_id=HGNC:620 | ||
|nearest_ensembl=ENSG00000154723 | |nearest_ensembl=ENSG00000154723 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001003696 |
|nearest_refseq=NM_001685 | |nearest_refseq=NM_001685 | ||
|nearest_unigene=Hs.246310 | |nearest_unigene=Hs.246310 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=25881145 | |start=25881145 | ||
|start_of_center_position=25881150 | |start_of_center_position=25881150 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF339738 MA575315 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_189956.1 | |tss_id=hg_189956.1 | ||
Latest revision as of 02:48, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 25881150 |
|---|---|
| End of the center position in the TSS region: | 25881151 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF339738 MA575315 |
|---|---|
| Distance: | 161 |
| Num_trans: | 10 |
| All_trans: | LF339738:161 MA575315:161 LF339739:-234 MA575316:-234 S41243:259 S41242:259 LF339737:303 MA575314:303 LF339740:-440 MA575317:-440 |
TATA-Box annotation
| Distance to TSS: | -145497 |
|---|---|
| Nearest PromoterID: | NM_001003696 |
| Entrez ID: | 522 |
| Nearest Unigene: | Hs.246310 |
| Nearest Refseq: | NM_001685 |
| Nearest Ensembl: | ENSG00000154723 |
| Gene Name: | ATP5PF |
| Gene Alias: | ATP5|ATP5A|ATP5J|ATPM|CF6|F6 |
| Gene Description: | ATP synthase peripheral stalk subunit F6 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.343284 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
