Difference between revisions of "TSS:Hg 189979.1"
From referenceTSS
| Line 8: | Line 8: | ||
|PN-II= | |PN-II= | ||
|PN2= | |PN2= | ||
| − | |all_trans=X06981:-26 X06982:-26 | + | |all_trans=LF339762:14 MA575339:14 LF339763:-21 MA575340:-21 X06981:-26 X06982:-26 |
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=14 |
|distance_to_tss=140244 | |distance_to_tss=140244 | ||
|end=26000158 | |end=26000158 | ||
| Line 17: | Line 17: | ||
|entrez_id=351 | |entrez_id=351 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=AAA | + | |gene_alias=AAA{{!}}ABETA{{!}}ABPP{{!}}AD1{{!}}APPI{{!}}CTFgamma{{!}}CVAP{{!}}PN-II{{!}}PN2{{!}}preA4 |
|gene_description=amyloid beta precursor protein | |gene_description=amyloid beta precursor protein | ||
|gene_id=351 | |gene_id=351 | ||
| − | |gene_name= | + | |gene_name=APP |
|gene_source=HGNC:620 | |gene_source=HGNC:620 | ||
|gene_symbol=APP | |gene_symbol=APP | ||
| Line 30: | Line 30: | ||
|nearest_refseq=NM_000484 | |nearest_refseq=NM_000484 | ||
|nearest_unigene=Hs.434980 | |nearest_unigene=Hs.434980 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=26000133 | |start=26000133 | ||
|start_of_center_position=26000145 | |start_of_center_position=26000145 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF339762 MA575339 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_189979.1 | |tss_id=hg_189979.1 | ||
Latest revision as of 02:48, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26000145 |
|---|---|
| End of the center position in the TSS region: | 26000146 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF339762 MA575339 |
|---|---|
| Distance: | 14 |
| Num_trans: | 6 |
| All_trans: | LF339762:14 MA575339:14 LF339763:-21 MA575340:-21 X06981:-26 X06982:-26 |
TATA-Box annotation
| Distance to TSS: | 140244 |
|---|---|
| Nearest PromoterID: | NM_001136016 |
| Entrez ID: | 351 |
| Nearest Unigene: | Hs.434980 |
| Nearest Refseq: | NM_000484 |
| Nearest Ensembl: | ENSG00000142192 |
| Gene Name: | APP |
| Gene Alias: | AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 |
| Gene Description: | amyloid beta precursor protein |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
