Difference between revisions of "TSS:Hg 189999.1"
From referenceTSS
| Line 8: | Line 8: | ||
|PN-II= | |PN-II= | ||
|PN2= | |PN2= | ||
| − | |all_trans=ENST00000348990.9:0 | + | |all_trans=ENST00000348990.9:0 ENST00000346798.8:0 NM_001136129:0 NM_000484:0 NM_201414:0 NM_201413:0 NM_001204302:0 NM_001204301:0 NM_001204303:0 NM_001136130:0 NM_001385253:0 Y00264:0 LF214042:0 MA449619:0 AK297412:0 AK294534:0 AK298861:0 M35675:0 BC065529:5 BC065523:5 ENST00000354192.7:9 AF282245:9 ENST00000474136.5:10 BC004369:10 ENST00000357903.7:-11 X06989:18 LF385141:-44 MA620718:-44 MA353526:50 AK297229:72 AK312326:72 ENST00000358918.7:89 ENST00000439274.6:102 HM005315:116 AB384791:131 EU832797:136 GQ129348:136 KJ901289:136 LF213391:281 MA448968:281 LF210650:-284 MA446227:-284 ENST00000359726.7:-352 NM_001136131:-352 LF385472:-352 MA621049:-352 AK296229:-352 |
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4 |
|end=26170776 | |end=26170776 | ||
|end_of_center_position=26170766 | |end_of_center_position=26170766 | ||
|entrez_id=351 | |entrez_id=351 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
| − | |gene_alias=AAA | + | |gene_alias=AAA{{!}}ABETA{{!}}ABPP{{!}}AD1{{!}}APPI{{!}}CTFgamma{{!}}CVAP{{!}}PN-II{{!}}PN2{{!}}preA4 |
|gene_description=amyloid beta precursor protein | |gene_description=amyloid beta precursor protein | ||
|gene_id=351 | |gene_id=351 | ||
| Line 23: | Line 23: | ||
|gene_source=HGNC:620 | |gene_source=HGNC:620 | ||
|gene_symbol=APP | |gene_symbol=APP | ||
| − | |gene_synonyms= | + | |gene_synonyms=alpha-sAPP |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:620 | |hgnc_mgi_id=HGNC:620 | ||
|nearest_ensembl=ENSG00000142192 | |nearest_ensembl=ENSG00000142192 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001136129 |
|nearest_refseq=NM_000484 | |nearest_refseq=NM_000484 | ||
|nearest_unigene=Hs.434980 | |nearest_unigene=Hs.434980 | ||
| − | |num_trans= | + | |num_trans=47 |
|species=human | |species=human | ||
|start=26170755 | |start=26170755 | ||
|start_of_center_position=26170765 | |start_of_center_position=26170765 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000348990.9 | + | |transcript_name=ENST00000348990.9 ENST00000346798.8 NM_001136129 NM_000484 NM_201414 NM_201413 NM_001204302 NM_001204301 NM_001204303 NM_001136130 NM_001385253 Y00264 LF214042 MA449619 AK297412 AK294534 AK298861 M35675 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_189999.1 | |tss_id=hg_189999.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DGD0 B4DMD5 B4DQM1 P05067 | + | |uniprot_id=A0A140VJC8 B4DGD0 B4DMD5 B4DQM1 P05067 |
}} | }} | ||
Revision as of 02:49, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26170765 |
|---|---|
| End of the center position in the TSS region: | 26170766 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000348990.9 ENST00000346798.8 NM_001136129 NM_000484 NM_201414 NM_201413 NM_001204302 NM_001204301 NM_001204303 NM_001136130 NM_001385253 Y00264 LF214042 MA449619 AK297412 AK294534 AK298861 M35675 |
|---|---|
| Distance: | 0 |
| Num_trans: | 47 |
| All_trans: | ENST00000348990.9:0 ENST00000346798.8:0 NM_001136129:0 NM_000484:0 NM_201414:0 NM_201413:0 NM_001204302:0 NM_001204301:0 NM_001204303:0 NM_001136130:0 NM_001385253:0 Y00264:0 LF214042:0 MA449619:0 AK297412:0 AK294534:0 AK298861:0 M35675:0 BC065529:5 BC065523:5 ENST00000354192.7:9 AF282245:9 ENST00000474136.5:10 BC004369:10 ENST00000357903.7:-11 X06989:18 LF385141:-44 MA620718:-44 MA353526:50 AK297229:72 AK312326:72 ENST00000358918.7:89 ENST00000439274.6:102 HM005315:116 AB384791:131 EU832797:136 GQ129348:136 KJ901289:136 LF213391:281 MA448968:281 LF210650:-284 MA446227:-284 ENST00000359726.7:-352 NM_001136131:-352 LF385472:-352 MA621049:-352 AK296229:-352 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001136129 |
| Entrez ID: | 351 |
| Nearest Unigene: | Hs.434980 |
| Nearest Refseq: | NM_000484 |
| Nearest Ensembl: | ENSG00000142192 |
| Gene Name: | amyloid beta precursor protein |
| Gene Alias: | AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 |
| Gene Description: | amyloid beta precursor protein |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
